miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 141118 0.71 0.862588
Target:  5'- --cUCGUcucCGUCAgcuUCGCCGUCGagaaguaCUCCa -3'
miRNA:   3'- cauAGCA---GCAGU---AGCGGCAGCg------GAGG- -5'
15845 5' -54.3 NC_004065.1 + 218805 0.71 0.869856
Target:  5'- cUGUCGUCGaaAUCcCCGUCGauaCUCCu -3'
miRNA:   3'- cAUAGCAGCagUAGcGGCAGCg--GAGG- -5'
15845 5' -54.3 NC_004065.1 + 43446 0.71 0.876923
Target:  5'- -cAUCGUCGUCGUCGCa---GCCacaucaUCCg -3'
miRNA:   3'- caUAGCAGCAGUAGCGgcagCGG------AGG- -5'
15845 5' -54.3 NC_004065.1 + 183113 0.71 0.876923
Target:  5'- -cGUCGUCGUgaccCAUCGCgGcCcCCUCCa -3'
miRNA:   3'- caUAGCAGCA----GUAGCGgCaGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 13785 0.71 0.877618
Target:  5'- cGUGUCGUCGgcUCAgaauccuacuaguagCGCCG-CGCCUUUa -3'
miRNA:   3'- -CAUAGCAGC--AGUa--------------GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 47675 0.71 0.883784
Target:  5'- -aGUCGUCGUCGgaaUCGUCGUCcaccgaCCUCa -3'
miRNA:   3'- caUAGCAGCAGU---AGCGGCAGc-----GGAGg -5'
15845 5' -54.3 NC_004065.1 + 32807 0.71 0.883784
Target:  5'- uUGUCGUCGUCcUCguaGCCGUCggGCCgcucgUCCg -3'
miRNA:   3'- cAUAGCAGCAGuAG---CGGCAG--CGG-----AGG- -5'
15845 5' -54.3 NC_004065.1 + 51883 0.71 0.883784
Target:  5'- uUGUCGUUGUCGaccCGCCaUCGCCggcuUCCu -3'
miRNA:   3'- cAUAGCAGCAGUa--GCGGcAGCGG----AGG- -5'
15845 5' -54.3 NC_004065.1 + 73976 0.7 0.889779
Target:  5'- -gGUCGagGUCGUCGCgGUCcaggcagGUCUCCc -3'
miRNA:   3'- caUAGCagCAGUAGCGgCAG-------CGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 89869 0.7 0.890434
Target:  5'- gGUAUCGUUGUCGacggCGCCaUCGUCggCCc -3'
miRNA:   3'- -CAUAGCAGCAGUa---GCGGcAGCGGa-GG- -5'
15845 5' -54.3 NC_004065.1 + 192232 0.7 0.890434
Target:  5'- -cAUCGUCGUCGguuCCGUCGaCCUUUa -3'
miRNA:   3'- caUAGCAGCAGUagcGGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 110958 0.7 0.890434
Target:  5'- -cAUCcUCGUCAccuccaccuUCGCCGUCGUCagCCu -3'
miRNA:   3'- caUAGcAGCAGU---------AGCGGCAGCGGa-GG- -5'
15845 5' -54.3 NC_004065.1 + 172217 0.7 0.890434
Target:  5'- -gAUC-UCGUCGUCcCCGUCGgguCCUCCc -3'
miRNA:   3'- caUAGcAGCAGUAGcGGCAGC---GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 205487 0.7 0.890434
Target:  5'- --cUCGUcuccgcugcCGUCGUCGCUGcCGCCgCCa -3'
miRNA:   3'- cauAGCA---------GCAGUAGCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 97192 0.7 0.896871
Target:  5'- --cUCGUCGUCG-CGCUG-CGCCUg- -3'
miRNA:   3'- cauAGCAGCAGUaGCGGCaGCGGAgg -5'
15845 5' -54.3 NC_004065.1 + 43688 0.7 0.896871
Target:  5'- ---cCGUCGUCcgCGCCGUCGaagaUCg -3'
miRNA:   3'- cauaGCAGCAGuaGCGGCAGCgg--AGg -5'
15845 5' -54.3 NC_004065.1 + 51513 0.7 0.90309
Target:  5'- cUGUCGUagGcCAUgacgaCGCCGUCGCgUCCg -3'
miRNA:   3'- cAUAGCAg-CaGUA-----GCGGCAGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 196087 0.7 0.90309
Target:  5'- cGUGUcCGUCGaaUCcccuGUUGUCGUCGuCCUCCu -3'
miRNA:   3'- -CAUA-GCAGC--AG----UAGCGGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 98879 0.7 0.90309
Target:  5'- -gGUCGUCGUCGcccacgcgcUCGUCGaCGCgUCUa -3'
miRNA:   3'- caUAGCAGCAGU---------AGCGGCaGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 124573 0.7 0.909089
Target:  5'- --uUCGcCGUCAcguucUCGuCCGUCGCCacgUCCc -3'
miRNA:   3'- cauAGCaGCAGU-----AGC-GGCAGCGG---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.