Results 61 - 80 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15845 | 5' | -54.3 | NC_004065.1 | + | 167686 | 0.7 | 0.914866 |
Target: 5'- ---gCGUCaGUgAUCGUCGcCGUCUCCg -3' miRNA: 3'- cauaGCAG-CAgUAGCGGCaGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 43278 | 0.69 | 0.920418 |
Target: 5'- -aGUCGUCGUCGUCGaCC--CGCgaCCa -3' miRNA: 3'- caUAGCAGCAGUAGC-GGcaGCGgaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 42783 | 0.69 | 0.920418 |
Target: 5'- --cUCGUCGUCGUC-CCuUCGUCaUCCu -3' miRNA: 3'- cauAGCAGCAGUAGcGGcAGCGG-AGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 40990 | 0.69 | 0.920418 |
Target: 5'- -aAUCGUCGccguagacggcgUCGUCGaacaCGUUGaCCUCCg -3' miRNA: 3'- caUAGCAGC------------AGUAGCg---GCAGC-GGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 24591 | 0.69 | 0.920418 |
Target: 5'- cGUGUCGUCGcCGccacCGCCGcCGCCg-- -3' miRNA: 3'- -CAUAGCAGCaGUa---GCGGCaGCGGagg -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 203272 | 0.69 | 0.920418 |
Target: 5'- -cGUCGUCGUCGUCGUCcacgacgacguGUCGCgaaUCg -3' miRNA: 3'- caUAGCAGCAGUAGCGG-----------CAGCGg--AGg -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 58039 | 0.69 | 0.927814 |
Target: 5'- -gAUgGUCGUCGUucacgacgaccccucCGCCGcCGCCgCCg -3' miRNA: 3'- caUAgCAGCAGUA---------------GCGGCaGCGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 126897 | 0.69 | 0.930849 |
Target: 5'- -gAUCG-CGUgAgcCGCCGUCGCCaacgCCg -3' miRNA: 3'- caUAGCaGCAgUa-GCGGCAGCGGa---GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 88264 | 0.69 | 0.930849 |
Target: 5'- --cUCGUCGUCccccCGCaCGUCGUCgCCg -3' miRNA: 3'- cauAGCAGCAGua--GCG-GCAGCGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 90152 | 0.69 | 0.930849 |
Target: 5'- --cUCGUcCGUCcugcCGCCGgcuccgcCGCCUCCg -3' miRNA: 3'- cauAGCA-GCAGua--GCGGCa------GCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 154216 | 0.69 | 0.935249 |
Target: 5'- cUGUCGUCGugccaggugccUCGccgccgcucccccUCGCCGaccgcCGCCUCCg -3' miRNA: 3'- cAUAGCAGC-----------AGU-------------AGCGGCa----GCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 89243 | 0.69 | 0.935726 |
Target: 5'- -cGUCGcgucucucUCGUCAUCGUCGUCcCCaCCa -3' miRNA: 3'- caUAGC--------AGCAGUAGCGGCAGcGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 8039 | 0.69 | 0.935726 |
Target: 5'- gGUAUCGUCuUCGgguccCGaCGUCGCCUaCCu -3' miRNA: 3'- -CAUAGCAGcAGUa----GCgGCAGCGGA-GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 83314 | 0.69 | 0.940379 |
Target: 5'- --cUCGUCGUCGagcgCGgCGUCGCC-Ca -3' miRNA: 3'- cauAGCAGCAGUa---GCgGCAGCGGaGg -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 140038 | 0.69 | 0.944809 |
Target: 5'- ---cCGUCGgguucgcuccCGUCGUCGUC-CCUCCg -3' miRNA: 3'- cauaGCAGCa---------GUAGCGGCAGcGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 30810 | 0.69 | 0.944809 |
Target: 5'- cUGUCGUCacCGUCGCgGUgCGCgUCCu -3' miRNA: 3'- cAUAGCAGcaGUAGCGgCA-GCGgAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 27411 | 0.69 | 0.944809 |
Target: 5'- -cGUCGUCGacuccUCAUCGCacccaGCCUCUg -3' miRNA: 3'- caUAGCAGC-----AGUAGCGgcag-CGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 95161 | 0.69 | 0.946518 |
Target: 5'- --cUCGUCGcCGcCGCCGUgcaggguccagggccCGUCUCCg -3' miRNA: 3'- cauAGCAGCaGUaGCGGCA---------------GCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 120774 | 0.69 | 0.946518 |
Target: 5'- -aGUCGUCaUCGUcaccgacgccgcuacCGCCGcCGUCUCCc -3' miRNA: 3'- caUAGCAGcAGUA---------------GCGGCaGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 117998 | 0.68 | 0.949017 |
Target: 5'- uUGUCGUCGUCGUCcUCGUCGggcgagaaaCUCUu -3' miRNA: 3'- cAUAGCAGCAGUAGcGGCAGCg--------GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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