miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 151115 0.66 0.983685
Target:  5'- ---cCGUCGgcaGUC-UCGUCGUCUCCu -3'
miRNA:   3'- cauaGCAGCag-UAGcGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 209917 0.66 0.983685
Target:  5'- ----gGUCGUCAgagCGcCCGUCGUUcCCg -3'
miRNA:   3'- cauagCAGCAGUa--GC-GGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 134666 0.66 0.983685
Target:  5'- ---aCGUCGUUuUCGCUGaggaugCGCuCUCCu -3'
miRNA:   3'- cauaGCAGCAGuAGCGGCa-----GCG-GAGG- -5'
15845 5' -54.3 NC_004065.1 + 149130 0.66 0.983685
Target:  5'- gGUGUCGUU-UCGUCGa-GUCGCCUg- -3'
miRNA:   3'- -CAUAGCAGcAGUAGCggCAGCGGAgg -5'
15845 5' -54.3 NC_004065.1 + 35671 0.66 0.982569
Target:  5'- -cAUCGUCGcgaaggaacaccucaUCgagGUCGUCGUCGCUgaugaUCCg -3'
miRNA:   3'- caUAGCAGC---------------AG---UAGCGGCAGCGG-----AGG- -5'
15845 5' -54.3 NC_004065.1 + 34997 0.66 0.981794
Target:  5'- --cUCGaCGUCGUCGCCcGUCGUUggCg -3'
miRNA:   3'- cauAGCaGCAGUAGCGG-CAGCGGagG- -5'
15845 5' -54.3 NC_004065.1 + 52296 0.66 0.981794
Target:  5'- -gGUCGgCGcacacucucCAUCGCUGUCcCCUCCa -3'
miRNA:   3'- caUAGCaGCa--------GUAGCGGCAGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 118054 0.66 0.981794
Target:  5'- --cUCGUCGUaCA-CGUCuUCGuCCUCCa -3'
miRNA:   3'- cauAGCAGCA-GUaGCGGcAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 102410 0.66 0.981794
Target:  5'- --cUCGUCGaCGgacgggaggaGCCGgCGCCUCCc -3'
miRNA:   3'- cauAGCAGCaGUag--------CGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 114946 0.66 0.981794
Target:  5'- -cAUCaUCaGUCggCGCCGcCGgCCUCCa -3'
miRNA:   3'- caUAGcAG-CAGuaGCGGCaGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 153013 0.66 0.981794
Target:  5'- ----aGUCGagGUCGCagcaCGcCGCCUCCu -3'
miRNA:   3'- cauagCAGCagUAGCG----GCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 29199 0.66 0.981794
Target:  5'- ---cCGg-GUCGUCcCCGUCGCC-CCg -3'
miRNA:   3'- cauaGCagCAGUAGcGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 96628 0.66 0.981794
Target:  5'- --uUCGUCcUCGUCGCCGgcggUCGCgagCUCUu -3'
miRNA:   3'- cauAGCAGcAGUAGCGGC----AGCG---GAGG- -5'
15845 5' -54.3 NC_004065.1 + 1177 0.66 0.981794
Target:  5'- uGUGUCGUCGg---CGCCGcUGCCg-- -3'
miRNA:   3'- -CAUAGCAGCaguaGCGGCaGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 110870 0.66 0.981195
Target:  5'- ---cCGUCGccaugccgacuucaUCGUgCGCCGUCGauuaCUCCu -3'
miRNA:   3'- cauaGCAGC--------------AGUA-GCGGCAGCg---GAGG- -5'
15845 5' -54.3 NC_004065.1 + 149622 0.67 0.979742
Target:  5'- uUGUCGUccacCGUCAccggCGCCGUCGgCaggCCc -3'
miRNA:   3'- cAUAGCA----GCAGUa---GCGGCAGCgGa--GG- -5'
15845 5' -54.3 NC_004065.1 + 118302 0.67 0.979742
Target:  5'- -cAUCGUCcUCAUCGgcguucUCGUCGCCagCg -3'
miRNA:   3'- caUAGCAGcAGUAGC------GGCAGCGGagG- -5'
15845 5' -54.3 NC_004065.1 + 41361 0.67 0.979742
Target:  5'- ---cCGUCGUCuccCGCCGcgCGcCCUCg -3'
miRNA:   3'- cauaGCAGCAGua-GCGGCa-GC-GGAGg -5'
15845 5' -54.3 NC_004065.1 + 62014 0.67 0.979528
Target:  5'- --uUCGUCGUCucccccgGUCGCCaUCGCUgCUg -3'
miRNA:   3'- cauAGCAGCAG-------UAGCGGcAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 201066 0.67 0.977524
Target:  5'- ---gUGUCGUag-CGCCc-CGCCUCCg -3'
miRNA:   3'- cauaGCAGCAguaGCGGcaGCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.