miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 194509 0.67 0.977524
Target:  5'- ---cCGUCccCAcCuCCGUCGCCUCCa -3'
miRNA:   3'- cauaGCAGcaGUaGcGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 201066 0.67 0.977524
Target:  5'- ---gUGUCGUag-CGCCc-CGCCUCCg -3'
miRNA:   3'- cauaGCAGCAguaGCGGcaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 103083 0.67 0.97611
Target:  5'- ---gCGUCGUgaagaugaucuuggcCAUCGCCaUCccgGCCUCCa -3'
miRNA:   3'- cauaGCAGCA---------------GUAGCGGcAG---CGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 210972 0.67 0.97611
Target:  5'- --cUCGUCGUCAcagaugugggccacCGCCGcCGUCgUCCa -3'
miRNA:   3'- cauAGCAGCAGUa-------------GCGGCaGCGG-AGG- -5'
15845 5' -54.3 NC_004065.1 + 196611 0.67 0.975132
Target:  5'- cUGUCGcgagUGUCGgaugCGCCGgggcgagCGCCUCg -3'
miRNA:   3'- cAUAGCa---GCAGUa---GCGGCa------GCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 76806 0.67 0.975132
Target:  5'- cUAUCacCGuUCAUCGCCGUCGCggcgCUCg -3'
miRNA:   3'- cAUAGcaGC-AGUAGCGGCAGCG----GAGg -5'
15845 5' -54.3 NC_004065.1 + 17680 0.67 0.975132
Target:  5'- -gGUCGUcCGUCG-CGCCaUCGCCg-- -3'
miRNA:   3'- caUAGCA-GCAGUaGCGGcAGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 113645 0.67 0.974379
Target:  5'- -cGUCGUCGaguaucUCAgCGCCGgguuccccgcccucUCGCuCUCCa -3'
miRNA:   3'- caUAGCAGC------AGUaGCGGC--------------AGCG-GAGG- -5'
15845 5' -54.3 NC_004065.1 + 160832 0.67 0.97361
Target:  5'- ---cCGUCGacagCgacugugcgaacuccGUCGCCuUCGCCUCCg -3'
miRNA:   3'- cauaGCAGCa---G---------------UAGCGGcAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 203676 0.67 0.97361
Target:  5'- ---cCGUCGcCAgCGCCGaugacgacgacgacgUCGUCUCCg -3'
miRNA:   3'- cauaGCAGCaGUaGCGGC---------------AGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 202743 0.67 0.972559
Target:  5'- ---gCGUCGUCGgcggCGCCGcCgGUCUCUu -3'
miRNA:   3'- cauaGCAGCAGUa---GCGGCaG-CGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 81150 0.67 0.972559
Target:  5'- --uUCGUCccccUCGcccccCGCCGcCGCCUCCu -3'
miRNA:   3'- cauAGCAGc---AGUa----GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 109912 0.67 0.972559
Target:  5'- cGgcUCGUCcgccgCGgcCGCCGUCGCgUCCc -3'
miRNA:   3'- -CauAGCAGca---GUa-GCGGCAGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 28995 0.67 0.972559
Target:  5'- -cAUUGUUGUCGUCGUUuUCGgaaCCUCCc -3'
miRNA:   3'- caUAGCAGCAGUAGCGGcAGC---GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 161792 0.67 0.972559
Target:  5'- -cGUCcUCGUCAcCGCCGaCGCgCUCa -3'
miRNA:   3'- caUAGcAGCAGUaGCGGCaGCG-GAGg -5'
15845 5' -54.3 NC_004065.1 + 195431 0.67 0.972292
Target:  5'- ---cCGcCG-CGUCGCCGUCGUCggacaggUCCg -3'
miRNA:   3'- cauaGCaGCaGUAGCGGCAGCGG-------AGG- -5'
15845 5' -54.3 NC_004065.1 + 59684 0.67 0.972292
Target:  5'- --cUCGUCGUCcgaGUCGUCGUagaagggCGCCgagcggCCg -3'
miRNA:   3'- cauAGCAGCAG---UAGCGGCA-------GCGGa-----GG- -5'
15845 5' -54.3 NC_004065.1 + 159897 0.67 0.9698
Target:  5'- uGUGUuucUGUCGaUCggCGCCGcCGCCgCCg -3'
miRNA:   3'- -CAUA---GCAGC-AGuaGCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 192769 0.67 0.9698
Target:  5'- -gGUgGUCGUCGuguccgguuuUCGCUGcuUCGCCUgCa -3'
miRNA:   3'- caUAgCAGCAGU----------AGCGGC--AGCGGAgG- -5'
15845 5' -54.3 NC_004065.1 + 149239 0.67 0.9698
Target:  5'- ---cCGcCGcCGcCGCCGUCGCCUgCu -3'
miRNA:   3'- cauaGCaGCaGUaGCGGCAGCGGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.