miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 1177 0.66 0.981794
Target:  5'- uGUGUCGUCGg---CGCCGcUGCCg-- -3'
miRNA:   3'- -CAUAGCAGCaguaGCGGCaGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 7762 0.66 0.983685
Target:  5'- --cUCGgaCGUCAg-GCCGUCGCUguUCCc -3'
miRNA:   3'- cauAGCa-GCAGUagCGGCAGCGG--AGG- -5'
15845 5' -54.3 NC_004065.1 + 8039 0.69 0.935726
Target:  5'- gGUAUCGUCuUCGgguccCGaCGUCGCCUaCCu -3'
miRNA:   3'- -CAUAGCAGcAGUa----GCgGCAGCGGA-GG- -5'
15845 5' -54.3 NC_004065.1 + 13785 0.71 0.877618
Target:  5'- cGUGUCGUCGgcUCAgaauccuacuaguagCGCCG-CGCCUUUa -3'
miRNA:   3'- -CAUAGCAGC--AGUa--------------GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 17680 0.67 0.975132
Target:  5'- -gGUCGUcCGUCG-CGCCaUCGCCg-- -3'
miRNA:   3'- caUAGCA-GCAGUaGCGGcAGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 17706 0.72 0.815078
Target:  5'- ---cCGUCGUCGUCGCUuuguuguugCGCCUCa -3'
miRNA:   3'- cauaGCAGCAGUAGCGGca-------GCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 18498 0.66 0.987017
Target:  5'- --uUCGUCGcguuauUCGUgGUCGUCGgaCUCCu -3'
miRNA:   3'- cauAGCAGC------AGUAgCGGCAGCg-GAGG- -5'
15845 5' -54.3 NC_004065.1 + 18604 0.74 0.714632
Target:  5'- gGUGUUGUCGUCAcCGCCcaggcccacGUuuccccCGCCUCCg -3'
miRNA:   3'- -CAUAGCAGCAGUaGCGG---------CA------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 24591 0.69 0.920418
Target:  5'- cGUGUCGUCGcCGccacCGCCGcCGCCg-- -3'
miRNA:   3'- -CAUAGCAGCaGUa---GCGGCaGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 26347 0.66 0.985424
Target:  5'- -cGUCGUCGUCAUCGgCGcUgGCgaCg -3'
miRNA:   3'- caUAGCAGCAGUAGCgGC-AgCGgaGg -5'
15845 5' -54.3 NC_004065.1 + 27411 0.69 0.944809
Target:  5'- -cGUCGUCGacuccUCAUCGCacccaGCCUCUg -3'
miRNA:   3'- caUAGCAGC-----AGUAGCGgcag-CGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 28995 0.67 0.972559
Target:  5'- -cAUUGUUGUCGUCGUUuUCGgaaCCUCCc -3'
miRNA:   3'- caUAGCAGCAGUAGCGGcAGC---GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 29199 0.66 0.981794
Target:  5'- ---cCGg-GUCGUCcCCGUCGCC-CCg -3'
miRNA:   3'- cauaGCagCAGUAGcGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 30810 0.69 0.944809
Target:  5'- cUGUCGUCacCGUCGCgGUgCGCgUCCu -3'
miRNA:   3'- cAUAGCAGcaGUAGCGgCA-GCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 30916 0.66 0.988473
Target:  5'- cGUGUcCGUCGaCAUCGCCGggaCGCa--- -3'
miRNA:   3'- -CAUA-GCAGCaGUAGCGGCa--GCGgagg -5'
15845 5' -54.3 NC_004065.1 + 32807 0.71 0.883784
Target:  5'- uUGUCGUCGUCcUCguaGCCGUCggGCCgcucgUCCg -3'
miRNA:   3'- cAUAGCAGCAGuAG---CGGCAG--CGG-----AGG- -5'
15845 5' -54.3 NC_004065.1 + 34997 0.66 0.981794
Target:  5'- --cUCGaCGUCGUCGCCcGUCGUUggCg -3'
miRNA:   3'- cauAGCaGCAGUAGCGG-CAGCGGagG- -5'
15845 5' -54.3 NC_004065.1 + 35671 0.66 0.982569
Target:  5'- -cAUCGUCGcgaaggaacaccucaUCgagGUCGUCGUCGCUgaugaUCCg -3'
miRNA:   3'- caUAGCAGC---------------AG---UAGCGGCAGCGG-----AGG- -5'
15845 5' -54.3 NC_004065.1 + 35966 0.66 0.987017
Target:  5'- cUAUCGUCGUUA-CGuCCG-CGCCa-- -3'
miRNA:   3'- cAUAGCAGCAGUaGC-GGCaGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 36380 0.73 0.797914
Target:  5'- cUAUCGUCGcUC-UCGCUGcCGCCgCCa -3'
miRNA:   3'- cAUAGCAGC-AGuAGCGGCaGCGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.