miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 38162 0.66 0.988473
Target:  5'- gGUAUCGgggCGcCAUCGCggcgauaGUCGCggCCg -3'
miRNA:   3'- -CAUAGCa--GCaGUAGCGg------CAGCGgaGG- -5'
15845 5' -54.3 NC_004065.1 + 40402 0.68 0.956781
Target:  5'- ---cCGcCGUCAUCGUCGUCuUCUUCa -3'
miRNA:   3'- cauaGCaGCAGUAGCGGCAGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 40990 0.69 0.920418
Target:  5'- -aAUCGUCGccguagacggcgUCGUCGaacaCGUUGaCCUCCg -3'
miRNA:   3'- caUAGCAGC------------AGUAGCg---GCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 41361 0.67 0.979742
Target:  5'- ---cCGUCGUCuccCGCCGcgCGcCCUCg -3'
miRNA:   3'- cauaGCAGCAGua-GCGGCa-GC-GGAGg -5'
15845 5' -54.3 NC_004065.1 + 42783 0.69 0.920418
Target:  5'- --cUCGUCGUCGUC-CCuUCGUCaUCCu -3'
miRNA:   3'- cauAGCAGCAGUAGcGGcAGCGG-AGG- -5'
15845 5' -54.3 NC_004065.1 + 43278 0.69 0.920418
Target:  5'- -aGUCGUCGUCGUCGaCC--CGCgaCCa -3'
miRNA:   3'- caUAGCAGCAGUAGC-GGcaGCGgaGG- -5'
15845 5' -54.3 NC_004065.1 + 43446 0.71 0.876923
Target:  5'- -cAUCGUCGUCGUCGCa---GCCacaucaUCCg -3'
miRNA:   3'- caUAGCAGCAGUAGCGgcagCGG------AGG- -5'
15845 5' -54.3 NC_004065.1 + 43688 0.7 0.896871
Target:  5'- ---cCGUCGUCcgCGCCGUCGaagaUCg -3'
miRNA:   3'- cauaGCAGCAGuaGCGGCAGCgg--AGg -5'
15845 5' -54.3 NC_004065.1 + 44081 0.66 0.985256
Target:  5'- aGUGguaGUUGUgAUCGCCGuggagggUCGCCaCCg -3'
miRNA:   3'- -CAUag-CAGCAgUAGCGGC-------AGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 47675 0.71 0.883784
Target:  5'- -aGUCGUCGUCGgaaUCGUCGUCcaccgaCCUCa -3'
miRNA:   3'- caUAGCAGCAGU---AGCGGCAGc-----GGAGg -5'
15845 5' -54.3 NC_004065.1 + 51513 0.7 0.90309
Target:  5'- cUGUCGUagGcCAUgacgaCGCCGUCGCgUCCg -3'
miRNA:   3'- cAUAGCAg-CaGUA-----GCGGCAGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 51883 0.71 0.883784
Target:  5'- uUGUCGUUGUCGaccCGCCaUCGCCggcuUCCu -3'
miRNA:   3'- cAUAGCAGCAGUa--GCGGcAGCGG----AGG- -5'
15845 5' -54.3 NC_004065.1 + 52296 0.66 0.981794
Target:  5'- -gGUCGgCGcacacucucCAUCGCUGUCcCCUCCa -3'
miRNA:   3'- caUAGCaGCa--------GUAGCGGCAGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 54111 0.75 0.685374
Target:  5'- ---cCGcCGUCAUCGCCGcgacgaucaUCGUCUCCc -3'
miRNA:   3'- cauaGCaGCAGUAGCGGC---------AGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 56044 0.76 0.596194
Target:  5'- --uUCGUCaUCGUCGCCGUCGCgaUCa -3'
miRNA:   3'- cauAGCAGcAGUAGCGGCAGCGgaGG- -5'
15845 5' -54.3 NC_004065.1 + 57761 0.81 0.377633
Target:  5'- -gAUCGUCGUCGccgcCGCCGUCGCuCUCg -3'
miRNA:   3'- caUAGCAGCAGUa---GCGGCAGCG-GAGg -5'
15845 5' -54.3 NC_004065.1 + 58039 0.69 0.927814
Target:  5'- -gAUgGUCGUCGUucacgacgaccccucCGCCGcCGCCgCCg -3'
miRNA:   3'- caUAgCAGCAGUA---------------GCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 59684 0.67 0.972292
Target:  5'- --cUCGUCGUCcgaGUCGUCGUagaagggCGCCgagcggCCg -3'
miRNA:   3'- cauAGCAGCAG---UAGCGGCA-------GCGGa-----GG- -5'
15845 5' -54.3 NC_004065.1 + 62014 0.67 0.979528
Target:  5'- --uUCGUCGUCucccccgGUCGCCaUCGCUgCUg -3'
miRNA:   3'- cauAGCAGCAG-------UAGCGGcAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 66567 0.73 0.797914
Target:  5'- -aGUCGUUcUCGUCGCUGgcgagCGCCUgCCg -3'
miRNA:   3'- caUAGCAGcAGUAGCGGCa----GCGGA-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.