miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 91472 0.68 0.953007
Target:  5'- -cGUCGcCGUCAgucCGCCGcCGCUcgugCCg -3'
miRNA:   3'- caUAGCaGCAGUa--GCGGCaGCGGa---GG- -5'
15845 5' -54.3 NC_004065.1 + 91788 0.68 0.953007
Target:  5'- -gAUCGUCGUC--CGCCauggCGaCCUCCc -3'
miRNA:   3'- caUAGCAGCAGuaGCGGca--GC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 94870 0.73 0.789116
Target:  5'- --cUCGUCGUCAUCGacguccCCGUCGUCaUCa -3'
miRNA:   3'- cauAGCAGCAGUAGC------GGCAGCGG-AGg -5'
15845 5' -54.3 NC_004065.1 + 95161 0.69 0.946518
Target:  5'- --cUCGUCGcCGcCGCCGUgcaggguccagggccCGUCUCCg -3'
miRNA:   3'- cauAGCAGCaGUaGCGGCA---------------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 96628 0.66 0.981794
Target:  5'- --uUCGUCcUCGUCGCCGgcggUCGCgagCUCUu -3'
miRNA:   3'- cauAGCAGcAGUAGCGGC----AGCG---GAGG- -5'
15845 5' -54.3 NC_004065.1 + 97192 0.7 0.896871
Target:  5'- --cUCGUCGUCG-CGCUG-CGCCUg- -3'
miRNA:   3'- cauAGCAGCAGUaGCGGCaGCGGAgg -5'
15845 5' -54.3 NC_004065.1 + 98879 0.7 0.90309
Target:  5'- -gGUCGUCGUCGcccacgcgcUCGUCGaCGCgUCUa -3'
miRNA:   3'- caUAGCAGCAGU---------AGCGGCaGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 99265 0.75 0.665648
Target:  5'- --cUCGaCGUCGUCGUCGUCcuCCUCCu -3'
miRNA:   3'- cauAGCaGCAGUAGCGGCAGc-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 99992 0.76 0.606096
Target:  5'- -gGUCGUCGUCuUCGUCGUagcCGCCgCCg -3'
miRNA:   3'- caUAGCAGCAGuAGCGGCA---GCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 102410 0.66 0.981794
Target:  5'- --cUCGUCGaCGgacgggaggaGCCGgCGCCUCCc -3'
miRNA:   3'- cauAGCAGCaGUag--------CGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 103083 0.67 0.97611
Target:  5'- ---gCGUCGUgaagaugaucuuggcCAUCGCCaUCccgGCCUCCa -3'
miRNA:   3'- cauaGCAGCA---------------GUAGCGGcAG---CGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 104284 0.74 0.752675
Target:  5'- -gGUCuGUcCGUC-UCGUCGuUCGCCUCCa -3'
miRNA:   3'- caUAG-CA-GCAGuAGCGGC-AGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 109912 0.67 0.972559
Target:  5'- cGgcUCGUCcgccgCGgcCGCCGUCGCgUCCc -3'
miRNA:   3'- -CauAGCAGca---GUa-GCGGCAGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 109914 0.66 0.987017
Target:  5'- ---cCGgcgaGUCAagCGCCGuacggacauUCGCCUCCg -3'
miRNA:   3'- cauaGCag--CAGUa-GCGGC---------AGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 110870 0.66 0.981195
Target:  5'- ---cCGUCGccaugccgacuucaUCGUgCGCCGUCGauuaCUCCu -3'
miRNA:   3'- cauaGCAGC--------------AGUA-GCGGCAGCg---GAGG- -5'
15845 5' -54.3 NC_004065.1 + 110958 0.7 0.890434
Target:  5'- -cAUCcUCGUCAccuccaccuUCGCCGUCGUCagCCu -3'
miRNA:   3'- caUAGcAGCAGU---------AGCGGCAGCGGa-GG- -5'
15845 5' -54.3 NC_004065.1 + 111724 0.72 0.839632
Target:  5'- -------aGgggCAUCGCCGUCGCCUUCg -3'
miRNA:   3'- cauagcagCa--GUAGCGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 112746 0.73 0.789116
Target:  5'- -gAUCGUCcUgAUCGCCGgcucgugCGCCUCUu -3'
miRNA:   3'- caUAGCAGcAgUAGCGGCa------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 113645 0.67 0.974379
Target:  5'- -cGUCGUCGaguaucUCAgCGCCGgguuccccgcccucUCGCuCUCCa -3'
miRNA:   3'- caUAGCAGC------AGUaGCGGC--------------AGCG-GAGG- -5'
15845 5' -54.3 NC_004065.1 + 114946 0.66 0.981794
Target:  5'- -cAUCaUCaGUCggCGCCGcCGgCCUCCa -3'
miRNA:   3'- caUAGcAG-CAGuaGCGGCaGC-GGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.