miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 115160 0.79 0.444903
Target:  5'- -cAUCGUCGUCGggCGCCG-CGCC-CCg -3'
miRNA:   3'- caUAGCAGCAGUa-GCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 115266 0.8 0.436127
Target:  5'- --cUCGUCGUCAUCGUcauCGUCGUCgUCCg -3'
miRNA:   3'- cauAGCAGCAGUAGCG---GCAGCGG-AGG- -5'
15845 5' -54.3 NC_004065.1 + 116257 0.67 0.966847
Target:  5'- -aGUCgGUCGUCugcCGCCGcggcugucccUCGgCCUCCu -3'
miRNA:   3'- caUAG-CAGCAGua-GCGGC----------AGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 117998 0.68 0.949017
Target:  5'- uUGUCGUCGUCGUCcUCGUCGggcgagaaaCUCUu -3'
miRNA:   3'- cAUAGCAGCAGUAGcGGCAGCg--------GAGG- -5'
15845 5' -54.3 NC_004065.1 + 118054 0.66 0.981794
Target:  5'- --cUCGUCGUaCA-CGUCuUCGuCCUCCa -3'
miRNA:   3'- cauAGCAGCA-GUaGCGGcAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 118255 0.76 0.596194
Target:  5'- --uUCGUCGUCAucaucauccUCGUCGUCGuCCUCg -3'
miRNA:   3'- cauAGCAGCAGU---------AGCGGCAGC-GGAGg -5'
15845 5' -54.3 NC_004065.1 + 118302 0.67 0.979742
Target:  5'- -cAUCGUCcUCAUCGgcguucUCGUCGCCagCg -3'
miRNA:   3'- caUAGCAGcAGUAGC------GGCAGCGGagG- -5'
15845 5' -54.3 NC_004065.1 + 118602 0.77 0.566662
Target:  5'- -cAUCGUCGUCAUCaucauccUCGUCGuCCUCCu -3'
miRNA:   3'- caUAGCAGCAGUAGc------GGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 120774 0.69 0.946518
Target:  5'- -aGUCGUCaUCGUcaccgacgccgcuacCGCCGcCGUCUCCc -3'
miRNA:   3'- caUAGCAGcAGUA---------------GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 124318 0.78 0.499512
Target:  5'- aUGUCGUgGU--UCGCCGUCGCCgCCa -3'
miRNA:   3'- cAUAGCAgCAguAGCGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 124573 0.7 0.909089
Target:  5'- --uUCGcCGUCAcguucUCGuCCGUCGCCacgUCCc -3'
miRNA:   3'- cauAGCaGCAGU-----AGC-GGCAGCGG---AGG- -5'
15845 5' -54.3 NC_004065.1 + 125114 0.66 0.985424
Target:  5'- cGUGUaCGcCGcCGgcaccaccgCGCCGUCGCCcagCCg -3'
miRNA:   3'- -CAUA-GCaGCaGUa--------GCGGCAGCGGa--GG- -5'
15845 5' -54.3 NC_004065.1 + 126897 0.69 0.930849
Target:  5'- -gAUCG-CGUgAgcCGCCGUCGCCaacgCCg -3'
miRNA:   3'- caUAGCaGCAgUa-GCGGCAGCGGa---GG- -5'
15845 5' -54.3 NC_004065.1 + 128158 0.66 0.985424
Target:  5'- -cGUCGUCGUCugcggCGgCGauagCGCCcCCg -3'
miRNA:   3'- caUAGCAGCAGua---GCgGCa---GCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 130652 0.72 0.823429
Target:  5'- -aGUCGggacaGUCggCGCCGUCGCUgCCa -3'
miRNA:   3'- caUAGCag---CAGuaGCGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 133494 0.67 0.977524
Target:  5'- --cUCGUCcagcuccUCGgacUCGUCGUCGuCCUCCg -3'
miRNA:   3'- cauAGCAGc------AGU---AGCGGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 134666 0.66 0.983685
Target:  5'- ---aCGUCGUUuUCGCUGaggaugCGCuCUCCu -3'
miRNA:   3'- cauaGCAGCAGuAGCGGCa-----GCG-GAGG- -5'
15845 5' -54.3 NC_004065.1 + 140038 0.69 0.944809
Target:  5'- ---cCGUCGgguucgcuccCGUCGUCGUC-CCUCCg -3'
miRNA:   3'- cauaGCAGCa---------GUAGCGGCAGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 141118 0.71 0.862588
Target:  5'- --cUCGUcucCGUCAgcuUCGCCGUCGagaaguaCUCCa -3'
miRNA:   3'- cauAGCA---GCAGU---AGCGGCAGCg------GAGG- -5'
15845 5' -54.3 NC_004065.1 + 146455 0.67 0.966847
Target:  5'- --uUCccCGcCGUCGCCGUCuaCUCCg -3'
miRNA:   3'- cauAGcaGCaGUAGCGGCAGcgGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.