Results 61 - 80 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15845 | 5' | -54.3 | NC_004065.1 | + | 146455 | 0.67 | 0.966847 |
Target: 5'- --uUCccCGcCGUCGCCGUCuaCUCCg -3' miRNA: 3'- cauAGcaGCaGUAGCGGCAGcgGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 141118 | 0.71 | 0.862588 |
Target: 5'- --cUCGUcucCGUCAgcuUCGCCGUCGagaaguaCUCCa -3' miRNA: 3'- cauAGCA---GCAGU---AGCGGCAGCg------GAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 140038 | 0.69 | 0.944809 |
Target: 5'- ---cCGUCGgguucgcuccCGUCGUCGUC-CCUCCg -3' miRNA: 3'- cauaGCAGCa---------GUAGCGGCAGcGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 134666 | 0.66 | 0.983685 |
Target: 5'- ---aCGUCGUUuUCGCUGaggaugCGCuCUCCu -3' miRNA: 3'- cauaGCAGCAGuAGCGGCa-----GCG-GAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 133494 | 0.67 | 0.977524 |
Target: 5'- --cUCGUCcagcuccUCGgacUCGUCGUCGuCCUCCg -3' miRNA: 3'- cauAGCAGc------AGU---AGCGGCAGC-GGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 130652 | 0.72 | 0.823429 |
Target: 5'- -aGUCGggacaGUCggCGCCGUCGCUgCCa -3' miRNA: 3'- caUAGCag---CAGuaGCGGCAGCGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 128158 | 0.66 | 0.985424 |
Target: 5'- -cGUCGUCGUCugcggCGgCGauagCGCCcCCg -3' miRNA: 3'- caUAGCAGCAGua---GCgGCa---GCGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 126897 | 0.69 | 0.930849 |
Target: 5'- -gAUCG-CGUgAgcCGCCGUCGCCaacgCCg -3' miRNA: 3'- caUAGCaGCAgUa-GCGGCAGCGGa---GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 125114 | 0.66 | 0.985424 |
Target: 5'- cGUGUaCGcCGcCGgcaccaccgCGCCGUCGCCcagCCg -3' miRNA: 3'- -CAUA-GCaGCaGUa--------GCGGCAGCGGa--GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 124573 | 0.7 | 0.909089 |
Target: 5'- --uUCGcCGUCAcguucUCGuCCGUCGCCacgUCCc -3' miRNA: 3'- cauAGCaGCAGU-----AGC-GGCAGCGG---AGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 124318 | 0.78 | 0.499512 |
Target: 5'- aUGUCGUgGU--UCGCCGUCGCCgCCa -3' miRNA: 3'- cAUAGCAgCAguAGCGGCAGCGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 120774 | 0.69 | 0.946518 |
Target: 5'- -aGUCGUCaUCGUcaccgacgccgcuacCGCCGcCGUCUCCc -3' miRNA: 3'- caUAGCAGcAGUA---------------GCGGCaGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 118602 | 0.77 | 0.566662 |
Target: 5'- -cAUCGUCGUCAUCaucauccUCGUCGuCCUCCu -3' miRNA: 3'- caUAGCAGCAGUAGc------GGCAGC-GGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 118302 | 0.67 | 0.979742 |
Target: 5'- -cAUCGUCcUCAUCGgcguucUCGUCGCCagCg -3' miRNA: 3'- caUAGCAGcAGUAGC------GGCAGCGGagG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 118255 | 0.76 | 0.596194 |
Target: 5'- --uUCGUCGUCAucaucauccUCGUCGUCGuCCUCg -3' miRNA: 3'- cauAGCAGCAGU---------AGCGGCAGC-GGAGg -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 118054 | 0.66 | 0.981794 |
Target: 5'- --cUCGUCGUaCA-CGUCuUCGuCCUCCa -3' miRNA: 3'- cauAGCAGCA-GUaGCGGcAGC-GGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 117998 | 0.68 | 0.949017 |
Target: 5'- uUGUCGUCGUCGUCcUCGUCGggcgagaaaCUCUu -3' miRNA: 3'- cAUAGCAGCAGUAGcGGCAGCg--------GAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 116257 | 0.67 | 0.966847 |
Target: 5'- -aGUCgGUCGUCugcCGCCGcggcugucccUCGgCCUCCu -3' miRNA: 3'- caUAG-CAGCAGua-GCGGC----------AGC-GGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 115266 | 0.8 | 0.436127 |
Target: 5'- --cUCGUCGUCAUCGUcauCGUCGUCgUCCg -3' miRNA: 3'- cauAGCAGCAGUAGCG---GCAGCGG-AGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 115160 | 0.79 | 0.444903 |
Target: 5'- -cAUCGUCGUCGggCGCCG-CGCC-CCg -3' miRNA: 3'- caUAGCAGCAGUa-GCGGCaGCGGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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