miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 217426 0.71 0.855125
Target:  5'- -----aUCG-CAUCGCaCGUCGUCUCCg -3'
miRNA:   3'- cauagcAGCaGUAGCG-GCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 161484 0.73 0.761956
Target:  5'- ---aCGcCGUCAccucCGCCGcCGCCUCCu -3'
miRNA:   3'- cauaGCaGCAGUa---GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 170250 0.73 0.771129
Target:  5'- gGUAUCGUgGcCGUgGCCGcCGCCgCCa -3'
miRNA:   3'- -CAUAGCAgCaGUAgCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 112746 0.73 0.789116
Target:  5'- -gAUCGUCcUgAUCGCCGgcucgugCGCCUCUu -3'
miRNA:   3'- caUAGCAGcAgUAGCGGCa------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 207672 0.73 0.789116
Target:  5'- ---cUGUCGUCGUUGCCGUUcucaagaucuugGCCUCg -3'
miRNA:   3'- cauaGCAGCAGUAGCGGCAG------------CGGAGg -5'
15845 5' -54.3 NC_004065.1 + 36380 0.73 0.797914
Target:  5'- cUAUCGUCGcUC-UCGCUGcCGCCgCCa -3'
miRNA:   3'- cAUAGCAGC-AGuAGCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 66567 0.73 0.797914
Target:  5'- -aGUCGUUcUCGUCGCUGgcgagCGCCUgCCg -3'
miRNA:   3'- caUAGCAGcAGUAGCGGCa----GCGGA-GG- -5'
15845 5' -54.3 NC_004065.1 + 17706 0.72 0.815078
Target:  5'- ---cCGUCGUCGUCGCUuuguuguugCGCCUCa -3'
miRNA:   3'- cauaGCAGCAGUAGCGGca-------GCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 111724 0.72 0.839632
Target:  5'- -------aGgggCAUCGCCGUCGCCUUCg -3'
miRNA:   3'- cauagcagCa--GUAGCGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 104284 0.74 0.752675
Target:  5'- -gGUCuGUcCGUC-UCGUCGuUCGCCUCCa -3'
miRNA:   3'- caUAG-CA-GCAGuAGCGGC-AGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 207523 0.74 0.743293
Target:  5'- -gGUCGUCGguccUCcUCGCCG-CGCgCUCCg -3'
miRNA:   3'- caUAGCAGC----AGuAGCGGCaGCG-GAGG- -5'
15845 5' -54.3 NC_004065.1 + 18604 0.74 0.714632
Target:  5'- gGUGUUGUCGUCAcCGCCcaggcccacGUuuccccCGCCUCCg -3'
miRNA:   3'- -CAUAGCAGCAGUaGCGG---------CA------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 57761 0.81 0.377633
Target:  5'- -gAUCGUCGUCGccgcCGCCGUCGCuCUCg -3'
miRNA:   3'- caUAGCAGCAGUa---GCGGCAGCG-GAGg -5'
15845 5' -54.3 NC_004065.1 + 124318 0.78 0.499512
Target:  5'- aUGUCGUgGU--UCGCCGUCGCCgCCa -3'
miRNA:   3'- cAUAGCAgCAguAGCGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 118602 0.77 0.566662
Target:  5'- -cAUCGUCGUCAUCaucauccUCGUCGuCCUCCu -3'
miRNA:   3'- caUAGCAGCAGUAGc------GGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 118255 0.76 0.596194
Target:  5'- --uUCGUCGUCAucaucauccUCGUCGUCGuCCUCg -3'
miRNA:   3'- cauAGCAGCAGU---------AGCGGCAGC-GGAGg -5'
15845 5' -54.3 NC_004065.1 + 99992 0.76 0.606096
Target:  5'- -gGUCGUCGUCuUCGUCGUagcCGCCgCCg -3'
miRNA:   3'- caUAGCAGCAGuAGCGGCA---GCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 199240 0.76 0.625948
Target:  5'- -cGUCaGUCGUCAUCGUCGgcgucCGCgUCCg -3'
miRNA:   3'- caUAG-CAGCAGUAGCGGCa----GCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 99265 0.75 0.665648
Target:  5'- --cUCGaCGUCGUCGUCGUCcuCCUCCu -3'
miRNA:   3'- cauAGCaGCAGUAGCGGCAGc-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 54111 0.75 0.685374
Target:  5'- ---cCGcCGUCAUCGCCGcgacgaucaUCGUCUCCc -3'
miRNA:   3'- cauaGCaGCAGUAGCGGC---------AGCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.