miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 111724 0.72 0.839632
Target:  5'- -------aGgggCAUCGCCGUCGCCUUCg -3'
miRNA:   3'- cauagcagCa--GUAGCGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 217426 0.71 0.855125
Target:  5'- -----aUCG-CAUCGCaCGUCGUCUCCg -3'
miRNA:   3'- cauagcAGCaGUAGCG-GCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 97192 0.7 0.896871
Target:  5'- --cUCGUCGUCG-CGCUG-CGCCUg- -3'
miRNA:   3'- cauAGCAGCAGUaGCGGCaGCGGAgg -5'
15845 5' -54.3 NC_004065.1 + 51513 0.7 0.90309
Target:  5'- cUGUCGUagGcCAUgacgaCGCCGUCGCgUCCg -3'
miRNA:   3'- cAUAGCAg-CaGUA-----GCGGCAGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 98879 0.7 0.90309
Target:  5'- -gGUCGUCGUCGcccacgcgcUCGUCGaCGCgUCUa -3'
miRNA:   3'- caUAGCAGCAGU---------AGCGGCaGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 196087 0.7 0.90309
Target:  5'- cGUGUcCGUCGaaUCcccuGUUGUCGUCGuCCUCCu -3'
miRNA:   3'- -CAUA-GCAGC--AG----UAGCGGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 124573 0.7 0.909089
Target:  5'- --uUCGcCGUCAcguucUCGuCCGUCGCCacgUCCc -3'
miRNA:   3'- cauAGCaGCAGU-----AGC-GGCAGCGG---AGG- -5'
15845 5' -54.3 NC_004065.1 + 167686 0.7 0.914866
Target:  5'- ---gCGUCaGUgAUCGUCGcCGUCUCCg -3'
miRNA:   3'- cauaGCAG-CAgUAGCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 24591 0.69 0.920418
Target:  5'- cGUGUCGUCGcCGccacCGCCGcCGCCg-- -3'
miRNA:   3'- -CAUAGCAGCaGUa---GCGGCaGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 40990 0.69 0.920418
Target:  5'- -aAUCGUCGccguagacggcgUCGUCGaacaCGUUGaCCUCCg -3'
miRNA:   3'- caUAGCAGC------------AGUAGCg---GCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 43688 0.7 0.896871
Target:  5'- ---cCGUCGUCcgCGCCGUCGaagaUCg -3'
miRNA:   3'- cauaGCAGCAGuaGCGGCAGCgg--AGg -5'
15845 5' -54.3 NC_004065.1 + 192232 0.7 0.890434
Target:  5'- -cAUCGUCGUCGguuCCGUCGaCCUUUa -3'
miRNA:   3'- caUAGCAGCAGUagcGGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 43446 0.71 0.876923
Target:  5'- -cAUCGUCGUCGUCGCa---GCCacaucaUCCg -3'
miRNA:   3'- caUAGCAGCAGUAGCGgcagCGG------AGG- -5'
15845 5' -54.3 NC_004065.1 + 13785 0.71 0.877618
Target:  5'- cGUGUCGUCGgcUCAgaauccuacuaguagCGCCG-CGCCUUUa -3'
miRNA:   3'- -CAUAGCAGC--AGUa--------------GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 51883 0.71 0.883784
Target:  5'- uUGUCGUUGUCGaccCGCCaUCGCCggcuUCCu -3'
miRNA:   3'- cAUAGCAGCAGUa--GCGGcAGCGG----AGG- -5'
15845 5' -54.3 NC_004065.1 + 32807 0.71 0.883784
Target:  5'- uUGUCGUCGUCcUCguaGCCGUCggGCCgcucgUCCg -3'
miRNA:   3'- cAUAGCAGCAGuAG---CGGCAG--CGG-----AGG- -5'
15845 5' -54.3 NC_004065.1 + 47675 0.71 0.883784
Target:  5'- -aGUCGUCGUCGgaaUCGUCGUCcaccgaCCUCa -3'
miRNA:   3'- caUAGCAGCAGU---AGCGGCAGc-----GGAGg -5'
15845 5' -54.3 NC_004065.1 + 73976 0.7 0.889779
Target:  5'- -gGUCGagGUCGUCGCgGUCcaggcagGUCUCCc -3'
miRNA:   3'- caUAGCagCAGUAGCGgCAG-------CGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 172217 0.7 0.890434
Target:  5'- -gAUC-UCGUCGUCcCCGUCGgguCCUCCc -3'
miRNA:   3'- caUAGcAGCAGUAGcGGCAGC---GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 110958 0.7 0.890434
Target:  5'- -cAUCcUCGUCAccuccaccuUCGCCGUCGUCagCCu -3'
miRNA:   3'- caUAGcAGCAGU---------AGCGGCAGCGGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.