miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 124573 0.7 0.909089
Target:  5'- --uUCGcCGUCAcguucUCGuCCGUCGCCacgUCCc -3'
miRNA:   3'- cauAGCaGCAGU-----AGC-GGCAGCGG---AGG- -5'
15845 5' -54.3 NC_004065.1 + 196087 0.7 0.90309
Target:  5'- cGUGUcCGUCGaaUCcccuGUUGUCGUCGuCCUCCu -3'
miRNA:   3'- -CAUA-GCAGC--AG----UAGCGGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 32807 0.71 0.883784
Target:  5'- uUGUCGUCGUCcUCguaGCCGUCggGCCgcucgUCCg -3'
miRNA:   3'- cAUAGCAGCAGuAG---CGGCAG--CGG-----AGG- -5'
15845 5' -54.3 NC_004065.1 + 47675 0.71 0.883784
Target:  5'- -aGUCGUCGUCGgaaUCGUCGUCcaccgaCCUCa -3'
miRNA:   3'- caUAGCAGCAGU---AGCGGCAGc-----GGAGg -5'
15845 5' -54.3 NC_004065.1 + 73976 0.7 0.889779
Target:  5'- -gGUCGagGUCGUCGCgGUCcaggcagGUCUCCc -3'
miRNA:   3'- caUAGCagCAGUAGCGgCAG-------CGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 172217 0.7 0.890434
Target:  5'- -gAUC-UCGUCGUCcCCGUCGgguCCUCCc -3'
miRNA:   3'- caUAGcAGCAGUAGcGGCAGC---GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 110958 0.7 0.890434
Target:  5'- -cAUCcUCGUCAccuccaccuUCGCCGUCGUCagCCu -3'
miRNA:   3'- caUAGcAGCAGU---------AGCGGCAGCGGa-GG- -5'
15845 5' -54.3 NC_004065.1 + 192232 0.7 0.890434
Target:  5'- -cAUCGUCGUCGguuCCGUCGaCCUUUa -3'
miRNA:   3'- caUAGCAGCAGUagcGGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 43688 0.7 0.896871
Target:  5'- ---cCGUCGUCcgCGCCGUCGaagaUCg -3'
miRNA:   3'- cauaGCAGCAGuaGCGGCAGCgg--AGg -5'
15845 5' -54.3 NC_004065.1 + 97192 0.7 0.896871
Target:  5'- --cUCGUCGUCG-CGCUG-CGCCUg- -3'
miRNA:   3'- cauAGCAGCAGUaGCGGCaGCGGAgg -5'
15845 5' -54.3 NC_004065.1 + 51513 0.7 0.90309
Target:  5'- cUGUCGUagGcCAUgacgaCGCCGUCGCgUCCg -3'
miRNA:   3'- cAUAGCAg-CaGUA-----GCGGCAGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 98879 0.7 0.90309
Target:  5'- -gGUCGUCGUCGcccacgcgcUCGUCGaCGCgUCUa -3'
miRNA:   3'- caUAGCAGCAGU---------AGCGGCaGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 185365 0.73 0.761956
Target:  5'- --uUCGUCGcCGacgaCGCCGUCGUCUUCg -3'
miRNA:   3'- cauAGCAGCaGUa---GCGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 163250 0.75 0.655742
Target:  5'- --uUCGUCGgcgCAgcggcggCGCCGgCGCCUCCu -3'
miRNA:   3'- cauAGCAGCa--GUa------GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 56044 0.76 0.596194
Target:  5'- --uUCGUCaUCGUCGCCGUCGCgaUCa -3'
miRNA:   3'- cauAGCAGcAGUAGCGGCAGCGgaGG- -5'
15845 5' -54.3 NC_004065.1 + 209302 0.79 0.480959
Target:  5'- -gAUCGcCGUCGUCGCCGUCGgUgCCg -3'
miRNA:   3'- caUAGCaGCAGUAGCGGCAGCgGaGG- -5'
15845 5' -54.3 NC_004065.1 + 115160 0.79 0.444903
Target:  5'- -cAUCGUCGUCGggCGCCG-CGCC-CCg -3'
miRNA:   3'- caUAGCAGCAGUa-GCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 115266 0.8 0.436127
Target:  5'- --cUCGUCGUCAUCGUcauCGUCGUCgUCCg -3'
miRNA:   3'- cauAGCAGCAGUAGCG---GCAGCGG-AGG- -5'
15845 5' -54.3 NC_004065.1 + 202912 0.82 0.331871
Target:  5'- -cAUCGUCGUCAUCGUCGUCGUUggcguucggggUCCu -3'
miRNA:   3'- caUAGCAGCAGUAGCGGCAGCGG-----------AGG- -5'
15845 5' -54.3 NC_004065.1 + 152815 0.66 0.988473
Target:  5'- ---gCGUgGcCAUCGCCGUgcggggCGCCgCCg -3'
miRNA:   3'- cauaGCAgCaGUAGCGGCA------GCGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.