Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15845 | 5' | -54.3 | NC_004065.1 | + | 89869 | 0.7 | 0.890434 |
Target: 5'- gGUAUCGUUGUCGacggCGCCaUCGUCggCCc -3' miRNA: 3'- -CAUAGCAGCAGUa---GCGGcAGCGGa-GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 178436 | 0.71 | 0.862588 |
Target: 5'- -cAUCuUCGggGUCGCCGaagaguggcgguUCGCCUCCa -3' miRNA: 3'- caUAGcAGCagUAGCGGC------------AGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 94870 | 0.73 | 0.789116 |
Target: 5'- --cUCGUCGUCAUCGacguccCCGUCGUCaUCa -3' miRNA: 3'- cauAGCAGCAGUAGC------GGCAGCGG-AGg -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 115160 | 0.79 | 0.444903 |
Target: 5'- -cAUCGUCGUCGggCGCCG-CGCC-CCg -3' miRNA: 3'- caUAGCAGCAGUa-GCGGCaGCGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 91472 | 0.68 | 0.953007 |
Target: 5'- -cGUCGcCGUCAgucCGCCGcCGCUcgugCCg -3' miRNA: 3'- caUAGCaGCAGUa--GCGGCaGCGGa---GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 8039 | 0.69 | 0.935726 |
Target: 5'- gGUAUCGUCuUCGgguccCGaCGUCGCCUaCCu -3' miRNA: 3'- -CAUAGCAGcAGUa----GCgGCAGCGGA-GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 77364 | 0.71 | 0.855125 |
Target: 5'- ---gCGcCGUCGcCGCCGUUGgCUCCg -3' miRNA: 3'- cauaGCaGCAGUaGCGGCAGCgGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 115266 | 0.8 | 0.436127 |
Target: 5'- --cUCGUCGUCAUCGUcauCGUCGUCgUCCg -3' miRNA: 3'- cauAGCAGCAGUAGCG---GCAGCGG-AGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 89243 | 0.69 | 0.935726 |
Target: 5'- -cGUCGcgucucucUCGUCAUCGUCGUCcCCaCCa -3' miRNA: 3'- caUAGC--------AGCAGUAGCGGCAGcGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 202912 | 0.82 | 0.331871 |
Target: 5'- -cAUCGUCGUCAUCGUCGUCGUUggcguucggggUCCu -3' miRNA: 3'- caUAGCAGCAGUAGCGGCAGCGG-----------AGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 141118 | 0.71 | 0.862588 |
Target: 5'- --cUCGUcucCGUCAgcuUCGCCGUCGagaaguaCUCCa -3' miRNA: 3'- cauAGCA---GCAGU---AGCGGCAGCg------GAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 205487 | 0.7 | 0.890434 |
Target: 5'- --cUCGUcuccgcugcCGUCGUCGCUGcCGCCgCCa -3' miRNA: 3'- cauAGCA---------GCAGUAGCGGCaGCGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 130652 | 0.72 | 0.823429 |
Target: 5'- -aGUCGggacaGUCggCGCCGUCGCUgCCa -3' miRNA: 3'- caUAGCag---CAGuaGCGGCAGCGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 204530 | 0.73 | 0.789116 |
Target: 5'- ---cCGUCGUgGUCGCCaGaCGCCUCg -3' miRNA: 3'- cauaGCAGCAgUAGCGG-CaGCGGAGg -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 185365 | 0.73 | 0.761956 |
Target: 5'- --uUCGUCGcCGacgaCGCCGUCGUCUUCg -3' miRNA: 3'- cauAGCAGCaGUa---GCGGCAGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 209302 | 0.79 | 0.480959 |
Target: 5'- -gAUCGcCGUCGUCGCCGUCGgUgCCg -3' miRNA: 3'- caUAGCaGCAGUAGCGGCAGCgGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 85558 | 0.68 | 0.963697 |
Target: 5'- ---aCGUCGuguUCggCGCCaugGUCGCCUUCg -3' miRNA: 3'- cauaGCAGC---AGuaGCGG---CAGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 154767 | 0.68 | 0.956413 |
Target: 5'- ---aCGUCGUCGaCGagcucuaCUGUCGCUUCCu -3' miRNA: 3'- cauaGCAGCAGUaGC-------GGCAGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 117998 | 0.68 | 0.949017 |
Target: 5'- uUGUCGUCGUCGUCcUCGUCGggcgagaaaCUCUu -3' miRNA: 3'- cAUAGCAGCAGUAGcGGCAGCg--------GAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 83314 | 0.69 | 0.940379 |
Target: 5'- --cUCGUCGUCGagcgCGgCGUCGCC-Ca -3' miRNA: 3'- cauAGCAGCAGUa---GCgGCAGCGGaGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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