miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 89869 0.7 0.890434
Target:  5'- gGUAUCGUUGUCGacggCGCCaUCGUCggCCc -3'
miRNA:   3'- -CAUAGCAGCAGUa---GCGGcAGCGGa-GG- -5'
15845 5' -54.3 NC_004065.1 + 178436 0.71 0.862588
Target:  5'- -cAUCuUCGggGUCGCCGaagaguggcgguUCGCCUCCa -3'
miRNA:   3'- caUAGcAGCagUAGCGGC------------AGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 94870 0.73 0.789116
Target:  5'- --cUCGUCGUCAUCGacguccCCGUCGUCaUCa -3'
miRNA:   3'- cauAGCAGCAGUAGC------GGCAGCGG-AGg -5'
15845 5' -54.3 NC_004065.1 + 115160 0.79 0.444903
Target:  5'- -cAUCGUCGUCGggCGCCG-CGCC-CCg -3'
miRNA:   3'- caUAGCAGCAGUa-GCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 91472 0.68 0.953007
Target:  5'- -cGUCGcCGUCAgucCGCCGcCGCUcgugCCg -3'
miRNA:   3'- caUAGCaGCAGUa--GCGGCaGCGGa---GG- -5'
15845 5' -54.3 NC_004065.1 + 8039 0.69 0.935726
Target:  5'- gGUAUCGUCuUCGgguccCGaCGUCGCCUaCCu -3'
miRNA:   3'- -CAUAGCAGcAGUa----GCgGCAGCGGA-GG- -5'
15845 5' -54.3 NC_004065.1 + 77364 0.71 0.855125
Target:  5'- ---gCGcCGUCGcCGCCGUUGgCUCCg -3'
miRNA:   3'- cauaGCaGCAGUaGCGGCAGCgGAGG- -5'
15845 5' -54.3 NC_004065.1 + 115266 0.8 0.436127
Target:  5'- --cUCGUCGUCAUCGUcauCGUCGUCgUCCg -3'
miRNA:   3'- cauAGCAGCAGUAGCG---GCAGCGG-AGG- -5'
15845 5' -54.3 NC_004065.1 + 89243 0.69 0.935726
Target:  5'- -cGUCGcgucucucUCGUCAUCGUCGUCcCCaCCa -3'
miRNA:   3'- caUAGC--------AGCAGUAGCGGCAGcGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 202912 0.82 0.331871
Target:  5'- -cAUCGUCGUCAUCGUCGUCGUUggcguucggggUCCu -3'
miRNA:   3'- caUAGCAGCAGUAGCGGCAGCGG-----------AGG- -5'
15845 5' -54.3 NC_004065.1 + 141118 0.71 0.862588
Target:  5'- --cUCGUcucCGUCAgcuUCGCCGUCGagaaguaCUCCa -3'
miRNA:   3'- cauAGCA---GCAGU---AGCGGCAGCg------GAGG- -5'
15845 5' -54.3 NC_004065.1 + 205487 0.7 0.890434
Target:  5'- --cUCGUcuccgcugcCGUCGUCGCUGcCGCCgCCa -3'
miRNA:   3'- cauAGCA---------GCAGUAGCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 130652 0.72 0.823429
Target:  5'- -aGUCGggacaGUCggCGCCGUCGCUgCCa -3'
miRNA:   3'- caUAGCag---CAGuaGCGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 204530 0.73 0.789116
Target:  5'- ---cCGUCGUgGUCGCCaGaCGCCUCg -3'
miRNA:   3'- cauaGCAGCAgUAGCGG-CaGCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 185365 0.73 0.761956
Target:  5'- --uUCGUCGcCGacgaCGCCGUCGUCUUCg -3'
miRNA:   3'- cauAGCAGCaGUa---GCGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 209302 0.79 0.480959
Target:  5'- -gAUCGcCGUCGUCGCCGUCGgUgCCg -3'
miRNA:   3'- caUAGCaGCAGUAGCGGCAGCgGaGG- -5'
15845 5' -54.3 NC_004065.1 + 85558 0.68 0.963697
Target:  5'- ---aCGUCGuguUCggCGCCaugGUCGCCUUCg -3'
miRNA:   3'- cauaGCAGC---AGuaGCGG---CAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 154767 0.68 0.956413
Target:  5'- ---aCGUCGUCGaCGagcucuaCUGUCGCUUCCu -3'
miRNA:   3'- cauaGCAGCAGUaGC-------GGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 117998 0.68 0.949017
Target:  5'- uUGUCGUCGUCGUCcUCGUCGggcgagaaaCUCUu -3'
miRNA:   3'- cAUAGCAGCAGUAGcGGCAGCg--------GAGG- -5'
15845 5' -54.3 NC_004065.1 + 83314 0.69 0.940379
Target:  5'- --cUCGUCGUCGagcgCGgCGUCGCC-Ca -3'
miRNA:   3'- cauAGCAGCAGUa---GCgGCAGCGGaGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.