miRNA display CGI


Results 41 - 60 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 210875 0.68 0.953007
Target:  5'- -cAUCGgcagCAUCGUCGUCGuCCUCg -3'
miRNA:   3'- caUAGCagcaGUAGCGGCAGC-GGAGg -5'
15845 5' -54.3 NC_004065.1 + 77364 0.71 0.855125
Target:  5'- ---gCGcCGUCGcCGCCGUUGgCUCCg -3'
miRNA:   3'- cauaGCaGCAGUaGCGGCAGCgGAGG- -5'
15845 5' -54.3 NC_004065.1 + 115266 0.8 0.436127
Target:  5'- --cUCGUCGUCAUCGUcauCGUCGUCgUCCg -3'
miRNA:   3'- cauAGCAGCAGUAGCG---GCAGCGG-AGG- -5'
15845 5' -54.3 NC_004065.1 + 169464 0.68 0.953007
Target:  5'- cGUGUgCGgaccCGgCGUCuCCGUCGUCUCCg -3'
miRNA:   3'- -CAUA-GCa---GCaGUAGcGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 202912 0.82 0.331871
Target:  5'- -cAUCGUCGUCAUCGUCGUCGUUggcguucggggUCCu -3'
miRNA:   3'- caUAGCAGCAGUAGCGGCAGCGG-----------AGG- -5'
15845 5' -54.3 NC_004065.1 + 44081 0.66 0.985256
Target:  5'- aGUGguaGUUGUgAUCGCCGuggagggUCGCCaCCg -3'
miRNA:   3'- -CAUag-CAGCAgUAGCGGC-------AGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 209302 0.79 0.480959
Target:  5'- -gAUCGcCGUCGUCGCCGUCGgUgCCg -3'
miRNA:   3'- caUAGCaGCAGUAGCGGCAGCgGaGG- -5'
15845 5' -54.3 NC_004065.1 + 209917 0.66 0.983685
Target:  5'- ----gGUCGUCAgagCGcCCGUCGUUcCCg -3'
miRNA:   3'- cauagCAGCAGUa--GC-GGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 194509 0.67 0.977524
Target:  5'- ---cCGUCccCAcCuCCGUCGCCUCCa -3'
miRNA:   3'- cauaGCAGcaGUaGcGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 160832 0.67 0.97361
Target:  5'- ---cCGUCGacagCgacugugcgaacuccGUCGCCuUCGCCUCCg -3'
miRNA:   3'- cauaGCAGCa---G---------------UAGCGGcAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 192769 0.67 0.9698
Target:  5'- -gGUgGUCGUCGuguccgguuuUCGCUGcuUCGCCUgCa -3'
miRNA:   3'- caUAgCAGCAGU----------AGCGGC--AGCGGAgG- -5'
15845 5' -54.3 NC_004065.1 + 85558 0.68 0.963697
Target:  5'- ---aCGUCGuguUCggCGCCaugGUCGCCUUCg -3'
miRNA:   3'- cauaGCAGC---AGuaGCGG---CAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 154767 0.68 0.956413
Target:  5'- ---aCGUCGUCGaCGagcucuaCUGUCGCUUCCu -3'
miRNA:   3'- cauaGCAGCAGUaGC-------GGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 95161 0.69 0.946518
Target:  5'- --cUCGUCGcCGcCGCCGUgcaggguccagggccCGUCUCCg -3'
miRNA:   3'- cauAGCAGCaGUaGCGGCA---------------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 89243 0.69 0.935726
Target:  5'- -cGUCGcgucucucUCGUCAUCGUCGUCcCCaCCa -3'
miRNA:   3'- caUAGC--------AGCAGUAGCGGCAGcGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 89869 0.7 0.890434
Target:  5'- gGUAUCGUUGUCGacggCGCCaUCGUCggCCc -3'
miRNA:   3'- -CAUAGCAGCAGUa---GCGGcAGCGGa-GG- -5'
15845 5' -54.3 NC_004065.1 + 178436 0.71 0.862588
Target:  5'- -cAUCuUCGggGUCGCCGaagaguggcgguUCGCCUCCa -3'
miRNA:   3'- caUAGcAGCagUAGCGGC------------AGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 130652 0.72 0.823429
Target:  5'- -aGUCGggacaGUCggCGCCGUCGCUgCCa -3'
miRNA:   3'- caUAGCag---CAGuaGCGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 204530 0.73 0.789116
Target:  5'- ---cCGUCGUgGUCGCCaGaCGCCUCg -3'
miRNA:   3'- cauaGCAGCAgUAGCGG-CaGCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 185365 0.73 0.761956
Target:  5'- --uUCGUCGcCGacgaCGCCGUCGUCUUCg -3'
miRNA:   3'- cauAGCAGCaGUa---GCGGCAGCGGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.