miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 56044 0.76 0.596194
Target:  5'- --uUCGUCaUCGUCGCCGUCGCgaUCa -3'
miRNA:   3'- cauAGCAGcAGUAGCGGCAGCGgaGG- -5'
15845 5' -54.3 NC_004065.1 + 181421 0.73 0.761956
Target:  5'- -cGUCGacggUGUCAUCGCCa--GCCUCCu -3'
miRNA:   3'- caUAGCa---GCAGUAGCGGcagCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 77341 0.72 0.806571
Target:  5'- -cAUCGUUaUCAUCGCUGUC-CCUCg -3'
miRNA:   3'- caUAGCAGcAGUAGCGGCAGcGGAGg -5'
15845 5' -54.3 NC_004065.1 + 170885 0.72 0.823429
Target:  5'- --cUCGcCGUCGUCGCC-UCGCgCUCg -3'
miRNA:   3'- cauAGCaGCAGUAGCGGcAGCG-GAGg -5'
15845 5' -54.3 NC_004065.1 + 218805 0.71 0.869856
Target:  5'- cUGUCGUCGaaAUCcCCGUCGauaCUCCu -3'
miRNA:   3'- cAUAGCAGCagUAGcGGCAGCg--GAGG- -5'
15845 5' -54.3 NC_004065.1 + 196611 0.67 0.975132
Target:  5'- cUGUCGcgagUGUCGgaugCGCCGgggcgagCGCCUCg -3'
miRNA:   3'- cAUAGCa---GCAGUa---GCGGCa------GCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 116257 0.67 0.966847
Target:  5'- -aGUCgGUCGUCugcCGCCGcggcugucccUCGgCCUCCu -3'
miRNA:   3'- caUAG-CAGCAGua-GCGGC----------AGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 161792 0.67 0.972559
Target:  5'- -cGUCcUCGUCAcCGCCGaCGCgCUCa -3'
miRNA:   3'- caUAGcAGCAGUaGCGGCaGCG-GAGg -5'
15845 5' -54.3 NC_004065.1 + 112746 0.73 0.789116
Target:  5'- -gAUCGUCcUgAUCGCCGgcucgugCGCCUCUu -3'
miRNA:   3'- caUAGCAGcAgUAGCGGCa------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 88571 0.68 0.960343
Target:  5'- aUGUCGUCGaUCucggggauGUCGCCcucGUCGCggccCUCCa -3'
miRNA:   3'- cAUAGCAGC-AG--------UAGCGG---CAGCG----GAGG- -5'
15845 5' -54.3 NC_004065.1 + 146455 0.67 0.966847
Target:  5'- --uUCccCGcCGUCGCCGUCuaCUCCg -3'
miRNA:   3'- cauAGcaGCaGUAGCGGCAGcgGAGG- -5'
15845 5' -54.3 NC_004065.1 + 197702 0.67 0.966847
Target:  5'- --cUCGaCGUCcgaCGCCGUCGCggCCg -3'
miRNA:   3'- cauAGCaGCAGua-GCGGCAGCGgaGG- -5'
15845 5' -54.3 NC_004065.1 + 149239 0.67 0.9698
Target:  5'- ---cCGcCGcCGcCGCCGUCGCCUgCu -3'
miRNA:   3'- cauaGCaGCaGUaGCGGCAGCGGAgG- -5'
15845 5' -54.3 NC_004065.1 + 192232 0.7 0.890434
Target:  5'- -cAUCGUCGUCGguuCCGUCGaCCUUUa -3'
miRNA:   3'- caUAGCAGCAGUagcGGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 110958 0.7 0.890434
Target:  5'- -cAUCcUCGUCAccuccaccuUCGCCGUCGUCagCCu -3'
miRNA:   3'- caUAGcAGCAGU---------AGCGGCAGCGGa-GG- -5'
15845 5' -54.3 NC_004065.1 + 172217 0.7 0.890434
Target:  5'- -gAUC-UCGUCGUCcCCGUCGgguCCUCCc -3'
miRNA:   3'- caUAGcAGCAGUAGcGGCAGC---GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 195431 0.67 0.972292
Target:  5'- ---cCGcCG-CGUCGCCGUCGUCggacaggUCCg -3'
miRNA:   3'- cauaGCaGCaGUAGCGGCAGCGG-------AGG- -5'
15845 5' -54.3 NC_004065.1 + 81150 0.67 0.972559
Target:  5'- --uUCGUCccccUCGcccccCGCCGcCGCCUCCu -3'
miRNA:   3'- cauAGCAGc---AGUa----GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 82092 0.67 0.966847
Target:  5'- aUGUCGgCGaCGUCGCaGUCGaUCUCCa -3'
miRNA:   3'- cAUAGCaGCaGUAGCGgCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 43688 0.7 0.896871
Target:  5'- ---cCGUCGUCcgCGCCGUCGaagaUCg -3'
miRNA:   3'- cauaGCAGCAGuaGCGGCAGCgg--AGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.