miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15847 3' -53.9 NC_004065.1 + 206807 0.66 0.988365
Target:  5'- gCGUCcaGAGuCCGUGcGCCUG-CACGg -3'
miRNA:   3'- -GCAGcaCUUuGGCGCaCGGACuGUGC- -5'
15847 3' -53.9 NC_004065.1 + 1009 0.66 0.988365
Target:  5'- uGUCGgGAGACgaGCGUGCCccgcaggcaGGCGCa -3'
miRNA:   3'- gCAGCaCUUUGg-CGCACGGa--------CUGUGc -5'
15847 3' -53.9 NC_004065.1 + 154944 0.66 0.988365
Target:  5'- -aUUGUGuauucuGGCCG-GUGCCUGugAUGg -3'
miRNA:   3'- gcAGCACu-----UUGGCgCACGGACugUGC- -5'
15847 3' -53.9 NC_004065.1 + 169364 0.66 0.988081
Target:  5'- cCGUC-UGucagcucgaCGCGUGCgUGGCGCGg -3'
miRNA:   3'- -GCAGcACuuug-----GCGCACGgACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 5228 0.66 0.986891
Target:  5'- gGUCGUGA--CCGUGcUGCCgcccgcucaggUGGCGCu -3'
miRNA:   3'- gCAGCACUuuGGCGC-ACGG-----------ACUGUGc -5'
15847 3' -53.9 NC_004065.1 + 33777 0.66 0.986891
Target:  5'- uGUCGccGGGACCGCuuucgGCCcGACAUGc -3'
miRNA:   3'- gCAGCa-CUUUGGCGca---CGGaCUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 71174 0.66 0.986891
Target:  5'- --aCGUGA--CCGCGUcggucagcaGCCUGcACGCGa -3'
miRNA:   3'- gcaGCACUuuGGCGCA---------CGGAC-UGUGC- -5'
15847 3' -53.9 NC_004065.1 + 67068 0.66 0.983517
Target:  5'- aCGUCGUcucGAAAcgaugggcgauCCGCGUcGaUCUGGCGCGg -3'
miRNA:   3'- -GCAGCA---CUUU-----------GGCGCA-C-GGACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 156802 0.66 0.983517
Target:  5'- gGUCGUc--ACCGCGU-CCUucGGCACGa -3'
miRNA:   3'- gCAGCAcuuUGGCGCAcGGA--CUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 130749 0.66 0.983517
Target:  5'- uCGUCGUGGgcGACCGCGaGCaguACACc -3'
miRNA:   3'- -GCAGCACU--UUGGCGCaCGgacUGUGc -5'
15847 3' -53.9 NC_004065.1 + 205747 0.67 0.979523
Target:  5'- uGUCGcGggGCCGCGaGCCgUGAgcuCACc -3'
miRNA:   3'- gCAGCaCuuUGGCGCaCGG-ACU---GUGc -5'
15847 3' -53.9 NC_004065.1 + 174639 0.67 0.979523
Target:  5'- cCGUCG-GuuGCgGgGUGCCggagGACugGg -3'
miRNA:   3'- -GCAGCaCuuUGgCgCACGGa---CUGugC- -5'
15847 3' -53.9 NC_004065.1 + 75790 0.67 0.979523
Target:  5'- gGUCGgcgagggGGAGCgGCGgcgaggcaCCUGGCACGa -3'
miRNA:   3'- gCAGCa------CUUUGgCGCac------GGACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 217395 0.67 0.979523
Target:  5'- uCGcCGUGucGAACCGCGacGUCUcGACGCGc -3'
miRNA:   3'- -GCaGCAC--UUUGGCGCa-CGGA-CUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 27216 0.67 0.979523
Target:  5'- gGUCGUGGucGGCaGCGUG-UUGAUACGa -3'
miRNA:   3'- gCAGCACU--UUGgCGCACgGACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 120063 0.67 0.977276
Target:  5'- aCGUCGUcgGAGACCGC--GCCggaGAgGCGa -3'
miRNA:   3'- -GCAGCA--CUUUGGCGcaCGGa--CUgUGC- -5'
15847 3' -53.9 NC_004065.1 + 135341 0.67 0.977276
Target:  5'- gGUCa-GggGCCGCGagaucaagGCCaGACGCGg -3'
miRNA:   3'- gCAGcaCuuUGGCGCa-------CGGaCUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 133730 0.67 0.974852
Target:  5'- aGUCGUGuGGACgGCGU-CCgUGACGCc -3'
miRNA:   3'- gCAGCAC-UUUGgCGCAcGG-ACUGUGc -5'
15847 3' -53.9 NC_004065.1 + 151157 0.67 0.972246
Target:  5'- uCGUCG-GcGACCGCGaGC-UGGCGCGc -3'
miRNA:   3'- -GCAGCaCuUUGGCGCaCGgACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 166172 0.68 0.969449
Target:  5'- aCGUCGUGc-ACCGCGaugUGUCUGAgCAUc -3'
miRNA:   3'- -GCAGCACuuUGGCGC---ACGGACU-GUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.