miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15847 3' -53.9 NC_004065.1 + 1009 0.66 0.988365
Target:  5'- uGUCGgGAGACgaGCGUGCCccgcaggcaGGCGCa -3'
miRNA:   3'- gCAGCaCUUUGg-CGCACGGa--------CUGUGc -5'
15847 3' -53.9 NC_004065.1 + 1554 0.68 0.956258
Target:  5'- aCGUgGUGuguaagcuGACgGCGUGCCUGcgaGCGa -3'
miRNA:   3'- -GCAgCACu-------UUGgCGCACGGACug-UGC- -5'
15847 3' -53.9 NC_004065.1 + 5228 0.66 0.986891
Target:  5'- gGUCGUGA--CCGUGcUGCCgcccgcucaggUGGCGCu -3'
miRNA:   3'- gCAGCACUuuGGCGC-ACGG-----------ACUGUGc -5'
15847 3' -53.9 NC_004065.1 + 27216 0.67 0.979523
Target:  5'- gGUCGUGGucGGCaGCGUG-UUGAUACGa -3'
miRNA:   3'- gCAGCACU--UUGgCGCACgGACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 33238 0.7 0.913803
Target:  5'- uCGUCGUGggGCUGaucauGUGCCagGACGa- -3'
miRNA:   3'- -GCAGCACuuUGGCg----CACGGa-CUGUgc -5'
15847 3' -53.9 NC_004065.1 + 33777 0.66 0.986891
Target:  5'- uGUCGccGGGACCGCuuucgGCCcGACAUGc -3'
miRNA:   3'- gCAGCa-CUUUGGCGca---CGGaCUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 67068 0.66 0.983517
Target:  5'- aCGUCGUcucGAAAcgaugggcgauCCGCGUcGaUCUGGCGCGg -3'
miRNA:   3'- -GCAGCA---CUUU-----------GGCGCA-C-GGACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 71174 0.66 0.986891
Target:  5'- --aCGUGA--CCGCGUcggucagcaGCCUGcACGCGa -3'
miRNA:   3'- gcaGCACUuuGGCGCA---------CGGAC-UGUGC- -5'
15847 3' -53.9 NC_004065.1 + 75790 0.67 0.979523
Target:  5'- gGUCGgcgagggGGAGCgGCGgcgaggcaCCUGGCACGa -3'
miRNA:   3'- gCAGCa------CUUUGgCGCac------GGACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 82599 0.7 0.913803
Target:  5'- gCGUCcaUGAcGCCGuCGUGCUgcugGACGCGg -3'
miRNA:   3'- -GCAGc-ACUuUGGC-GCACGGa---CUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 87499 0.91 0.110608
Target:  5'- aCGUCGUGAAACCGCGU-CgCUGACACGg -3'
miRNA:   3'- -GCAGCACUUUGGCGCAcG-GACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 104168 0.68 0.959867
Target:  5'- uGUCG-GucGCCGCuucgGUGCCgGAUACGa -3'
miRNA:   3'- gCAGCaCuuUGGCG----CACGGaCUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 105106 0.69 0.948392
Target:  5'- gCG-CGUGGuGGCCGacgaCGUGCCgcugGACGCGg -3'
miRNA:   3'- -GCaGCACU-UUGGC----GCACGGa---CUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 108647 0.7 0.92482
Target:  5'- -aUCGUGuu-CUGCGUGCCgcUGGCGCc -3'
miRNA:   3'- gcAGCACuuuGGCGCACGG--ACUGUGc -5'
15847 3' -53.9 NC_004065.1 + 120063 0.67 0.977276
Target:  5'- aCGUCGUcgGAGACCGC--GCCggaGAgGCGa -3'
miRNA:   3'- -GCAGCA--CUUUGGCGcaCGGa--CUgUGC- -5'
15847 3' -53.9 NC_004065.1 + 123505 0.69 0.932979
Target:  5'- uGUCGgacGAggcuAACUGCGUGCCggauucgacucagGGCGCGg -3'
miRNA:   3'- gCAGCa--CU----UUGGCGCACGGa------------CUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 130749 0.66 0.983517
Target:  5'- uCGUCGUGGgcGACCGCGaGCaguACACc -3'
miRNA:   3'- -GCAGCACU--UUGGCGCaCGgacUGUGc -5'
15847 3' -53.9 NC_004065.1 + 132781 0.69 0.944128
Target:  5'- gGUCGccaGAAgcGCCGUGcGCCgGACGCGa -3'
miRNA:   3'- gCAGCa--CUU--UGGCGCaCGGaCUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 133730 0.67 0.974852
Target:  5'- aGUCGUGuGGACgGCGU-CCgUGACGCc -3'
miRNA:   3'- gCAGCAC-UUUGgCGCAcGG-ACUGUGc -5'
15847 3' -53.9 NC_004065.1 + 135341 0.67 0.977276
Target:  5'- gGUCa-GggGCCGCGagaucaagGCCaGACGCGg -3'
miRNA:   3'- gCAGcaCuuUGGCGCa-------CGGaCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.