miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15847 3' -53.9 NC_004065.1 + 149158 0.7 0.92482
Target:  5'- uCGUCGgGggGCCGgaGaccugGCCUGGCGCu -3'
miRNA:   3'- -GCAGCaCuuUGGCg-Ca----CGGACUGUGc -5'
15847 3' -53.9 NC_004065.1 + 154944 0.66 0.988365
Target:  5'- -aUUGUGuauucuGGCCG-GUGCCUGugAUGg -3'
miRNA:   3'- gcAGCACu-----UUGGCgCACGGACugUGC- -5'
15847 3' -53.9 NC_004065.1 + 206807 0.66 0.988365
Target:  5'- gCGUCcaGAGuCCGUGcGCCUG-CACGg -3'
miRNA:   3'- -GCAGcaCUUuGGCGCaCGGACuGUGC- -5'
15847 3' -53.9 NC_004065.1 + 1009 0.66 0.988365
Target:  5'- uGUCGgGAGACgaGCGUGCCccgcaggcaGGCGCa -3'
miRNA:   3'- gCAGCaCUUUGg-CGCACGGa--------CUGUGc -5'
15847 3' -53.9 NC_004065.1 + 130749 0.66 0.983517
Target:  5'- uCGUCGUGGgcGACCGCGaGCaguACACc -3'
miRNA:   3'- -GCAGCACU--UUGGCGCaCGgacUGUGc -5'
15847 3' -53.9 NC_004065.1 + 174639 0.67 0.979523
Target:  5'- cCGUCG-GuuGCgGgGUGCCggagGACugGg -3'
miRNA:   3'- -GCAGCaCuuUGgCgCACGGa---CUGugC- -5'
15847 3' -53.9 NC_004065.1 + 75790 0.67 0.979523
Target:  5'- gGUCGgcgagggGGAGCgGCGgcgaggcaCCUGGCACGa -3'
miRNA:   3'- gCAGCa------CUUUGgCGCac------GGACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 135341 0.67 0.977276
Target:  5'- gGUCa-GggGCCGCGagaucaagGCCaGACGCGg -3'
miRNA:   3'- gCAGcaCuuUGGCGCa-------CGGaCUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 151157 0.67 0.972246
Target:  5'- uCGUCG-GcGACCGCGaGC-UGGCGCGc -3'
miRNA:   3'- -GCAGCaCuUUGGCGCaCGgACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 166172 0.68 0.969449
Target:  5'- aCGUCGUGc-ACCGCGaugUGUCUGAgCAUc -3'
miRNA:   3'- -GCAGCACuuUGGCGC---ACGGACU-GUGc -5'
15847 3' -53.9 NC_004065.1 + 214538 0.69 0.931991
Target:  5'- gGUCGUucgcaccgugcauacGAGACCGgGUGCCUcuccGuCACGg -3'
miRNA:   3'- gCAGCA---------------CUUUGGCgCACGGA----CuGUGC- -5'
15847 3' -53.9 NC_004065.1 + 184944 0.69 0.948392
Target:  5'- gGUC-UGcagagcuccaGAGCUGCGUGuCCUGACACu -3'
miRNA:   3'- gCAGcAC----------UUUGGCGCAC-GGACUGUGc -5'
15847 3' -53.9 NC_004065.1 + 222257 0.69 0.952434
Target:  5'- aCGUCG-GGAACaGCGacgGCCUGACGu- -3'
miRNA:   3'- -GCAGCaCUUUGgCGCa--CGGACUGUgc -5'
15847 3' -53.9 NC_004065.1 + 215421 0.68 0.956258
Target:  5'- aGUCGgacaaugagGggGCUGUGUGCCaaagaucuuucUGGCACu -3'
miRNA:   3'- gCAGCa--------CuuUGGCGCACGG-----------ACUGUGc -5'
15847 3' -53.9 NC_004065.1 + 1554 0.68 0.956258
Target:  5'- aCGUgGUGuguaagcuGACgGCGUGCCUGcgaGCGa -3'
miRNA:   3'- -GCAgCACu-------UUGgCGCACGGACug-UGC- -5'
15847 3' -53.9 NC_004065.1 + 104168 0.68 0.959867
Target:  5'- uGUCG-GucGCCGCuucgGUGCCgGAUACGa -3'
miRNA:   3'- gCAGCaCuuUGGCG----CACGGaCUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 191840 0.68 0.963265
Target:  5'- cCGUCGUGGugacGGCCGCGacuaucGCCgcgaUGGCGCc -3'
miRNA:   3'- -GCAGCACU----UUGGCGCa-----CGG----ACUGUGc -5'
15847 3' -53.9 NC_004065.1 + 169364 0.66 0.988081
Target:  5'- cCGUC-UGucagcucgaCGCGUGCgUGGCGCGg -3'
miRNA:   3'- -GCAGcACuuug-----GCGCACGgACUGUGC- -5'
15847 3' -53.9 NC_004065.1 + 33238 0.7 0.913803
Target:  5'- uCGUCGUGggGCUGaucauGUGCCagGACGa- -3'
miRNA:   3'- -GCAGCACuuUGGCg----CACGGa-CUGUgc -5'
15847 3' -53.9 NC_004065.1 + 82599 0.7 0.913803
Target:  5'- gCGUCcaUGAcGCCGuCGUGCUgcugGACGCGg -3'
miRNA:   3'- -GCAGc-ACUuUGGC-GCACGGa---CUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.