miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15847 5' -60.7 NC_004065.1 + 79496 0.66 0.824589
Target:  5'- -uCGUGUCGGugGGGG-UGGUucccauCGCCg -3'
miRNA:   3'- gcGCACGGUCugCCCCaAUCG------GCGGa -5'
15847 5' -60.7 NC_004065.1 + 99071 0.66 0.823787
Target:  5'- gGCGaacauguUGCC-GAUGGGGgu-GCCGUCg -3'
miRNA:   3'- gCGC-------ACGGuCUGCCCCaauCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 151411 0.66 0.816492
Target:  5'- gGCGgGUCGGuCGGGG-UGGUCGaCCUc -3'
miRNA:   3'- gCGCaCGGUCuGCCCCaAUCGGC-GGA- -5'
15847 5' -60.7 NC_004065.1 + 27827 0.66 0.816492
Target:  5'- cCGaUGUGCCu-GCGGGuGcucGGCCGCCUg -3'
miRNA:   3'- -GC-GCACGGucUGCCC-Caa-UCGGCGGA- -5'
15847 5' -60.7 NC_004065.1 + 169587 0.66 0.799857
Target:  5'- uCGCGgcuccgGCCGGuucGCGGGG---GCCGUCa -3'
miRNA:   3'- -GCGCa-----CGGUC---UGCCCCaauCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 78575 0.66 0.799857
Target:  5'- uGC-UGgCAGAUGGGGUcgacGUCGCCg -3'
miRNA:   3'- gCGcACgGUCUGCCCCAau--CGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 855 0.66 0.791333
Target:  5'- aCGCGgagcgcaugacUGCCGGGCGaGGGcgccCCGCCg -3'
miRNA:   3'- -GCGC-----------ACGGUCUGC-CCCaaucGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 119622 0.66 0.782681
Target:  5'- -cUGUGCCgGGACGGGGagcgAGCCGauaCCg -3'
miRNA:   3'- gcGCACGG-UCUGCCCCaa--UCGGC---GGa -5'
15847 5' -60.7 NC_004065.1 + 115202 0.67 0.773909
Target:  5'- cCGUGgccGCCGcGACGGGGcauaCCGCCg -3'
miRNA:   3'- -GCGCa--CGGU-CUGCCCCaaucGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 196374 0.67 0.773909
Target:  5'- cCGCGcGCCGGACGGucgaAGCgCGCCc -3'
miRNA:   3'- -GCGCaCGGUCUGCCccaaUCG-GCGGa -5'
15847 5' -60.7 NC_004065.1 + 41428 0.67 0.765024
Target:  5'- cCGUGacgGaCCgAGACGGGGUgcUGGCCGUg- -3'
miRNA:   3'- -GCGCa--C-GG-UCUGCCCCA--AUCGGCGga -5'
15847 5' -60.7 NC_004065.1 + 43612 0.67 0.746945
Target:  5'- gGUGagGCCcaucaagaGGACGGGGUgcUGGUCGCUg -3'
miRNA:   3'- gCGCa-CGG--------UCUGCCCCA--AUCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 139709 0.67 0.737767
Target:  5'- aCGCGcuUGCCGGAUGaGGGacgUGGCCGa-- -3'
miRNA:   3'- -GCGC--ACGGUCUGC-CCCa--AUCGGCgga -5'
15847 5' -60.7 NC_004065.1 + 167414 0.67 0.737767
Target:  5'- cCGCGgcugcUGCCGccGGCGGGGgcGGCgGCgCUa -3'
miRNA:   3'- -GCGC-----ACGGU--CUGCCCCaaUCGgCG-GA- -5'
15847 5' -60.7 NC_004065.1 + 192715 0.67 0.737767
Target:  5'- aGCugGUGCCGacCGGGGgcucuugaGGCCGCCg -3'
miRNA:   3'- gCG--CACGGUcuGCCCCaa------UCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 159259 0.67 0.728507
Target:  5'- cCGUGaUGUaGGGCaGGGUggUGGCCGCCg -3'
miRNA:   3'- -GCGC-ACGgUCUGcCCCA--AUCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 6720 0.68 0.719173
Target:  5'- gCGUGUaGCCAuuucGAuCGGGG-UAGCCGCg- -3'
miRNA:   3'- -GCGCA-CGGU----CU-GCCCCaAUCGGCGga -5'
15847 5' -60.7 NC_004065.1 + 116884 0.68 0.709773
Target:  5'- gGCGUGCCugcugacgcugGGGCGcGGGaucgAGCUGCUg -3'
miRNA:   3'- gCGCACGG-----------UCUGC-CCCaa--UCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 124613 0.68 0.700314
Target:  5'- gCGCG-GCCAGcaGCGGGuuGUUGGUcagCGCCUc -3'
miRNA:   3'- -GCGCaCGGUC--UGCCC--CAAUCG---GCGGA- -5'
15847 5' -60.7 NC_004065.1 + 31818 0.68 0.700314
Target:  5'- gGCcUGCCGGACGcGGaGUUcagGGCCGaCCa -3'
miRNA:   3'- gCGcACGGUCUGC-CC-CAA---UCGGC-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.