miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15847 5' -60.7 NC_004065.1 + 161750 0.68 0.67166
Target:  5'- -cCGUGCCGG-UGGGGUUccuucGGCCGaCCc -3'
miRNA:   3'- gcGCACGGUCuGCCCCAA-----UCGGC-GGa -5'
15847 5' -60.7 NC_004065.1 + 31069 0.69 0.662041
Target:  5'- gGCGUacGCCuuccucauGGCGGcGGccUUGGCCGCCa -3'
miRNA:   3'- gCGCA--CGGu-------CUGCC-CC--AAUCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 130911 0.69 0.662041
Target:  5'- uGCGuUGCCGucaaACGGGGUUuauacGGCCGCg- -3'
miRNA:   3'- gCGC-ACGGUc---UGCCCCAA-----UCGGCGga -5'
15847 5' -60.7 NC_004065.1 + 152814 0.69 0.661078
Target:  5'- aGCGUggccaucGCCGuGCGGGGc--GCCGCCg -3'
miRNA:   3'- gCGCA-------CGGUcUGCCCCaauCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 203506 0.69 0.623422
Target:  5'- gGCuGUGCCGG-CGGGGUccGUCGCg- -3'
miRNA:   3'- gCG-CACGGUCuGCCCCAauCGGCGga -5'
15847 5' -60.7 NC_004065.1 + 180975 0.69 0.622456
Target:  5'- aGCuG-GCCGGACGGGGUUucgguccGGCuCGUCg -3'
miRNA:   3'- gCG-CaCGGUCUGCCCCAA-------UCG-GCGGa -5'
15847 5' -60.7 NC_004065.1 + 492 0.7 0.604121
Target:  5'- cCGCGcGCCgcguccgcgggaAGGCGGGGUgAGgCGCCc -3'
miRNA:   3'- -GCGCaCGG------------UCUGCCCCAaUCgGCGGa -5'
15847 5' -60.7 NC_004065.1 + 64903 0.7 0.604121
Target:  5'- aGCGgcgccagucGCCGGGCGGGac--GCCGCCUc -3'
miRNA:   3'- gCGCa--------CGGUCUGCCCcaauCGGCGGA- -5'
15847 5' -60.7 NC_004065.1 + 174650 0.7 0.594495
Target:  5'- gGgGUGCCGGAggacUGGGGUc-GUCGCCg -3'
miRNA:   3'- gCgCACGGUCU----GCCCCAauCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 169379 0.7 0.594495
Target:  5'- aCGCGUGCguGGCGcGGGgcaacacGGCCGUg- -3'
miRNA:   3'- -GCGCACGguCUGC-CCCaa-----UCGGCGga -5'
15847 5' -60.7 NC_004065.1 + 229429 0.7 0.594495
Target:  5'- gCGCGUaacuggucuGCCAccACGGGGUggcgcuGCCGCCa -3'
miRNA:   3'- -GCGCA---------CGGUc-UGCCCCAau----CGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 198678 0.7 0.565789
Target:  5'- cCGCGgauuuuCCGGACGGGGUguuuaaGGCgGCCc -3'
miRNA:   3'- -GCGCac----GGUCUGCCCCAa-----UCGgCGGa -5'
15847 5' -60.7 NC_004065.1 + 7817 0.71 0.546848
Target:  5'- gGCGUGCCGGugaAUGGGGUcguGUCGCg- -3'
miRNA:   3'- gCGCACGGUC---UGCCCCAau-CGGCGga -5'
15847 5' -60.7 NC_004065.1 + 96035 0.71 0.537453
Target:  5'- cCGCGUGCguGggcACGGGccccGGCCGCCg -3'
miRNA:   3'- -GCGCACGguC---UGCCCcaa-UCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 98862 0.71 0.537453
Target:  5'- uGCGcUGCCGGaACGGGGgucgucGUCGCCc -3'
miRNA:   3'- gCGC-ACGGUC-UGCCCCaau---CGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 205266 0.72 0.482416
Target:  5'- cCGCGccgGCCA-ACGGGG--GGCCGCCc -3'
miRNA:   3'- -GCGCa--CGGUcUGCCCCaaUCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 110828 0.72 0.473503
Target:  5'- --aGUGCCAGgcaccaguGCGGGGcgcgGGCCGCCc -3'
miRNA:   3'- gcgCACGGUC--------UGCCCCaa--UCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 99141 0.72 0.464673
Target:  5'- uGCG-GCC-GACGGcGGUaaacaccgUGGCCGCCUc -3'
miRNA:   3'- gCGCaCGGuCUGCC-CCA--------AUCGGCGGA- -5'
15847 5' -60.7 NC_004065.1 + 159720 0.72 0.454192
Target:  5'- aCGCG-GCCGuGugGGGGgugcugcugaaGGCCGCCg -3'
miRNA:   3'- -GCGCaCGGU-CugCCCCaa---------UCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 99975 0.73 0.387032
Target:  5'- gGCGUGCuCGGGcCGcGGGUcgucgucuucgucgUAGCCGCCg -3'
miRNA:   3'- gCGCACG-GUCU-GC-CCCA--------------AUCGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.