miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15847 5' -60.7 NC_004065.1 + 492 0.7 0.604121
Target:  5'- cCGCGcGCCgcguccgcgggaAGGCGGGGUgAGgCGCCc -3'
miRNA:   3'- -GCGCaCGG------------UCUGCCCCAaUCgGCGGa -5'
15847 5' -60.7 NC_004065.1 + 855 0.66 0.791333
Target:  5'- aCGCGgagcgcaugacUGCCGGGCGaGGGcgccCCGCCg -3'
miRNA:   3'- -GCGC-----------ACGGUCUGC-CCCaaucGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 6720 0.68 0.719173
Target:  5'- gCGUGUaGCCAuuucGAuCGGGG-UAGCCGCg- -3'
miRNA:   3'- -GCGCA-CGGU----CU-GCCCCaAUCGGCGga -5'
15847 5' -60.7 NC_004065.1 + 7817 0.71 0.546848
Target:  5'- gGCGUGCCGGugaAUGGGGUcguGUCGCg- -3'
miRNA:   3'- gCGCACGGUC---UGCCCCAau-CGGCGga -5'
15847 5' -60.7 NC_004065.1 + 27827 0.66 0.816492
Target:  5'- cCGaUGUGCCu-GCGGGuGcucGGCCGCCUg -3'
miRNA:   3'- -GC-GCACGGucUGCCC-Caa-UCGGCGGA- -5'
15847 5' -60.7 NC_004065.1 + 31069 0.69 0.662041
Target:  5'- gGCGUacGCCuuccucauGGCGGcGGccUUGGCCGCCa -3'
miRNA:   3'- gCGCA--CGGu-------CUGCC-CC--AAUCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 31818 0.68 0.700314
Target:  5'- gGCcUGCCGGACGcGGaGUUcagGGCCGaCCa -3'
miRNA:   3'- gCGcACGGUCUGC-CC-CAA---UCGGC-GGa -5'
15847 5' -60.7 NC_004065.1 + 41428 0.67 0.765024
Target:  5'- cCGUGacgGaCCgAGACGGGGUgcUGGCCGUg- -3'
miRNA:   3'- -GCGCa--C-GG-UCUGCCCCA--AUCGGCGga -5'
15847 5' -60.7 NC_004065.1 + 43612 0.67 0.746945
Target:  5'- gGUGagGCCcaucaagaGGACGGGGUgcUGGUCGCUg -3'
miRNA:   3'- gCGCa-CGG--------UCUGCCCCA--AUCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 55434 0.74 0.373788
Target:  5'- gGCGUGCUuccuaGCGGGGgucGCCGCCg -3'
miRNA:   3'- gCGCACGGuc---UGCCCCaauCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 64903 0.7 0.604121
Target:  5'- aGCGgcgccagucGCCGGGCGGGac--GCCGCCUc -3'
miRNA:   3'- gCGCa--------CGGUCUGCCCcaauCGGCGGA- -5'
15847 5' -60.7 NC_004065.1 + 75587 0.74 0.381541
Target:  5'- uCGUGUcGCCGG-CGGGGggaGGCCGCUg -3'
miRNA:   3'- -GCGCA-CGGUCuGCCCCaa-UCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 78575 0.66 0.799857
Target:  5'- uGC-UGgCAGAUGGGGUcgacGUCGCCg -3'
miRNA:   3'- gCGcACgGUCUGCCCCAau--CGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 79496 0.66 0.824589
Target:  5'- -uCGUGUCGGugGGGG-UGGUucccauCGCCg -3'
miRNA:   3'- gcGCACGGUCugCCCCaAUCG------GCGGa -5'
15847 5' -60.7 NC_004065.1 + 87539 1.08 0.002144
Target:  5'- gCGCGUGCCAGACGGGGUUAGCCGCCUg -3'
miRNA:   3'- -GCGCACGGUCUGCCCCAAUCGGCGGA- -5'
15847 5' -60.7 NC_004065.1 + 96035 0.71 0.537453
Target:  5'- cCGCGUGCguGggcACGGGccccGGCCGCCg -3'
miRNA:   3'- -GCGCACGguC---UGCCCcaa-UCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 98862 0.71 0.537453
Target:  5'- uGCGcUGCCGGaACGGGGgucgucGUCGCCc -3'
miRNA:   3'- gCGC-ACGGUC-UGCCCCaau---CGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 99071 0.66 0.823787
Target:  5'- gGCGaacauguUGCC-GAUGGGGgu-GCCGUCg -3'
miRNA:   3'- gCGC-------ACGGuCUGCCCCaauCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 99141 0.72 0.464673
Target:  5'- uGCG-GCC-GACGGcGGUaaacaccgUGGCCGCCUc -3'
miRNA:   3'- gCGCaCGGuCUGCC-CCA--------AUCGGCGGA- -5'
15847 5' -60.7 NC_004065.1 + 99975 0.73 0.387032
Target:  5'- gGCGUGCuCGGGcCGcGGGUcgucgucuucgucgUAGCCGCCg -3'
miRNA:   3'- gCGCACG-GUCU-GC-CCCA--------------AUCGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.