miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15847 5' -60.7 NC_004065.1 + 75587 0.74 0.381541
Target:  5'- uCGUGUcGCCGG-CGGGGggaGGCCGCUg -3'
miRNA:   3'- -GCGCA-CGGUCuGCCCCaa-UCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 27827 0.66 0.816492
Target:  5'- cCGaUGUGCCu-GCGGGuGcucGGCCGCCUg -3'
miRNA:   3'- -GC-GCACGGucUGCCC-Caa-UCGGCGGA- -5'
15847 5' -60.7 NC_004065.1 + 169587 0.66 0.799857
Target:  5'- uCGCGgcuccgGCCGGuucGCGGGG---GCCGUCa -3'
miRNA:   3'- -GCGCa-----CGGUC---UGCCCCaauCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 119622 0.66 0.782681
Target:  5'- -cUGUGCCgGGACGGGGagcgAGCCGauaCCg -3'
miRNA:   3'- gcGCACGG-UCUGCCCCaa--UCGGC---GGa -5'
15847 5' -60.7 NC_004065.1 + 196374 0.67 0.773909
Target:  5'- cCGCGcGCCGGACGGucgaAGCgCGCCc -3'
miRNA:   3'- -GCGCaCGGUCUGCCccaaUCG-GCGGa -5'
15847 5' -60.7 NC_004065.1 + 115202 0.67 0.773909
Target:  5'- cCGUGgccGCCGcGACGGGGcauaCCGCCg -3'
miRNA:   3'- -GCGCa--CGGU-CUGCCCCaaucGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 139709 0.67 0.737767
Target:  5'- aCGCGcuUGCCGGAUGaGGGacgUGGCCGa-- -3'
miRNA:   3'- -GCGC--ACGGUCUGC-CCCa--AUCGGCgga -5'
15847 5' -60.7 NC_004065.1 + 124613 0.68 0.700314
Target:  5'- gCGCG-GCCAGcaGCGGGuuGUUGGUcagCGCCUc -3'
miRNA:   3'- -GCGCaCGGUC--UGCCC--CAAUCG---GCGGA- -5'
15847 5' -60.7 NC_004065.1 + 161750 0.68 0.67166
Target:  5'- -cCGUGCCGG-UGGGGUUccuucGGCCGaCCc -3'
miRNA:   3'- gcGCACGGUCuGCCCCAA-----UCGGC-GGa -5'
15847 5' -60.7 NC_004065.1 + 31069 0.69 0.662041
Target:  5'- gGCGUacGCCuuccucauGGCGGcGGccUUGGCCGCCa -3'
miRNA:   3'- gCGCA--CGGu-------CUGCC-CC--AAUCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 492 0.7 0.604121
Target:  5'- cCGCGcGCCgcguccgcgggaAGGCGGGGUgAGgCGCCc -3'
miRNA:   3'- -GCGCaCGG------------UCUGCCCCAaUCgGCGGa -5'
15847 5' -60.7 NC_004065.1 + 99975 0.73 0.387032
Target:  5'- gGCGUGCuCGGGcCGcGGGUcgucgucuucgucgUAGCCGCCg -3'
miRNA:   3'- gCGCACG-GUCU-GC-CCCA--------------AUCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 99141 0.72 0.464673
Target:  5'- uGCG-GCC-GACGGcGGUaaacaccgUGGCCGCCUc -3'
miRNA:   3'- gCGCaCGGuCUGCC-CCA--------AUCGGCGGA- -5'
15847 5' -60.7 NC_004065.1 + 110828 0.72 0.473503
Target:  5'- --aGUGCCAGgcaccaguGCGGGGcgcgGGCCGCCc -3'
miRNA:   3'- gcgCACGGUC--------UGCCCCaa--UCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 98862 0.71 0.537453
Target:  5'- uGCGcUGCCGGaACGGGGgucgucGUCGCCc -3'
miRNA:   3'- gCGC-ACGGUC-UGCCCCaau---CGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 174650 0.7 0.594495
Target:  5'- gGgGUGCCGGAggacUGGGGUc-GUCGCCg -3'
miRNA:   3'- gCgCACGGUCU----GCCCCAauCGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 229429 0.7 0.594495
Target:  5'- gCGCGUaacuggucuGCCAccACGGGGUggcgcuGCCGCCa -3'
miRNA:   3'- -GCGCA---------CGGUc-UGCCCCAau----CGGCGGa -5'
15847 5' -60.7 NC_004065.1 + 64903 0.7 0.604121
Target:  5'- aGCGgcgccagucGCCGGGCGGGac--GCCGCCUc -3'
miRNA:   3'- gCGCa--------CGGUCUGCCCcaauCGGCGGA- -5'
15847 5' -60.7 NC_004065.1 + 79496 0.66 0.824589
Target:  5'- -uCGUGUCGGugGGGG-UGGUucccauCGCCg -3'
miRNA:   3'- gcGCACGGUCugCCCCaAUCG------GCGGa -5'
15847 5' -60.7 NC_004065.1 + 55434 0.74 0.373788
Target:  5'- gGCGUGCUuccuaGCGGGGgucGCCGCCg -3'
miRNA:   3'- gCGCACGGuc---UGCCCCaauCGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.