miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15848 3' -64.5 NC_004065.1 + 29665 0.66 0.671553
Target:  5'- cUCGccGGCGAagaGGaCGCCCAGG-UCCUCGu -3'
miRNA:   3'- cAGC--UCGCU---CC-GCGGGUCCuGGGGGC- -5'
15848 3' -64.5 NC_004065.1 + 186233 0.66 0.671553
Target:  5'- aUgGAGCGAuGCuGCCCcuGGccugGCCCCCGa -3'
miRNA:   3'- cAgCUCGCUcCG-CGGGu-CC----UGGGGGC- -5'
15848 3' -64.5 NC_004065.1 + 155865 0.66 0.662204
Target:  5'- cUCGAacgccgccuGCGGGGUucucgGCCCGGGcACCCgCCu -3'
miRNA:   3'- cAGCU---------CGCUCCG-----CGGGUCC-UGGG-GGc -5'
15848 3' -64.5 NC_004065.1 + 81765 0.66 0.662204
Target:  5'- cUCGGGCGAGuaccaGCUCAGGAagaugaagaaaCCCCGc -3'
miRNA:   3'- cAGCUCGCUCcg---CGGGUCCUg----------GGGGC- -5'
15848 3' -64.5 NC_004065.1 + 133730 0.66 0.662204
Target:  5'- aGUCGuGUGGacGGCGUCCGuGACgCCCCu -3'
miRNA:   3'- -CAGCuCGCU--CCGCGGGUcCUG-GGGGc -5'
15848 3' -64.5 NC_004065.1 + 24635 0.66 0.652836
Target:  5'- aGUUGAG-GAGGCGCgaucugguguuCUGGcGACCCUCGa -3'
miRNA:   3'- -CAGCUCgCUCCGCG-----------GGUC-CUGGGGGC- -5'
15848 3' -64.5 NC_004065.1 + 80840 0.66 0.652836
Target:  5'- -cCGAGCGAGcggaucggacgaGCGCcaggCCAGGucuccggcCCCCCGa -3'
miRNA:   3'- caGCUCGCUC------------CGCG----GGUCCu-------GGGGGC- -5'
15848 3' -64.5 NC_004065.1 + 179510 0.66 0.651898
Target:  5'- uUCGAGCagaaggaacgaGGGGaCGCCCaacugugGGGACCUgCGg -3'
miRNA:   3'- cAGCUCG-----------CUCC-GCGGG-------UCCUGGGgGC- -5'
15848 3' -64.5 NC_004065.1 + 40940 0.66 0.643453
Target:  5'- -cCGGGCGAGGU-CCUcGaGCCCCCGc -3'
miRNA:   3'- caGCUCGCUCCGcGGGuCcUGGGGGC- -5'
15848 3' -64.5 NC_004065.1 + 173794 0.66 0.643453
Target:  5'- gGUCGAcCGAGGgaaacUGCCUAGGAUCCUa- -3'
miRNA:   3'- -CAGCUcGCUCC-----GCGGGUCCUGGGGgc -5'
15848 3' -64.5 NC_004065.1 + 109517 0.66 0.634063
Target:  5'- cGUCGAGC--GGCGCCaagaGGGGgucgaugaaCCCCGg -3'
miRNA:   3'- -CAGCUCGcuCCGCGGg---UCCUg--------GGGGC- -5'
15848 3' -64.5 NC_004065.1 + 145445 0.66 0.634063
Target:  5'- aUCGcgauggagaGGCGAuGGCGUCgGGGGCUgCCGg -3'
miRNA:   3'- cAGC---------UCGCU-CCGCGGgUCCUGGgGGC- -5'
15848 3' -64.5 NC_004065.1 + 688 0.66 0.633123
Target:  5'- gGUCGAGCGAc-CGCCCGGGuuucgagAUgCCCGu -3'
miRNA:   3'- -CAGCUCGCUccGCGGGUCC-------UGgGGGC- -5'
15848 3' -64.5 NC_004065.1 + 133866 0.66 0.631245
Target:  5'- cGUCGAGUcgcaaGAcGGCGCgCCGGGcggaacgacgggccACCCUCGc -3'
miRNA:   3'- -CAGCUCG-----CU-CCGCG-GGUCC--------------UGGGGGC- -5'
15848 3' -64.5 NC_004065.1 + 131147 0.66 0.624671
Target:  5'- -aCGAGCGcguGGGCGaCgAcGACCCCCGu -3'
miRNA:   3'- caGCUCGC---UCCGCgGgUcCUGGGGGC- -5'
15848 3' -64.5 NC_004065.1 + 80144 0.66 0.624671
Target:  5'- cUCGGGUucGGGCGCgCAGGACaUCCGa -3'
miRNA:   3'- cAGCUCGc-UCCGCGgGUCCUGgGGGC- -5'
15848 3' -64.5 NC_004065.1 + 201447 0.66 0.624671
Target:  5'- gGUCGGGUGGGG-GCUCGagccGGACgcuCCCCGc -3'
miRNA:   3'- -CAGCUCGCUCCgCGGGU----CCUG---GGGGC- -5'
15848 3' -64.5 NC_004065.1 + 184864 0.66 0.624671
Target:  5'- aGUCGAGCG-GGCGgC-GGGACgCCgGg -3'
miRNA:   3'- -CAGCUCGCuCCGCgGgUCCUGgGGgC- -5'
15848 3' -64.5 NC_004065.1 + 52802 0.66 0.615284
Target:  5'- -gCGAGCaGAGcGCGCCC---GCCCUCGg -3'
miRNA:   3'- caGCUCG-CUC-CGCGGGuccUGGGGGC- -5'
15848 3' -64.5 NC_004065.1 + 18172 0.66 0.615284
Target:  5'- uGUgGAGCGc--CGgCCGGGACUCCCGu -3'
miRNA:   3'- -CAgCUCGCuccGCgGGUCCUGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.