miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15848 5' -56.3 NC_004065.1 + 170947 0.66 0.948444
Target:  5'- gCC-GGcGC-GCCgCGAUcUCGCUCACa -3'
miRNA:   3'- aGGuCCuCGuCGG-GCUAuAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 145739 0.66 0.948444
Target:  5'- -gCGGGAGCGGUgaugagugcgCCGAUcgcGUCGCgCGCc -3'
miRNA:   3'- agGUCCUCGUCG----------GGCUA---UAGCGaGUG- -5'
15848 5' -56.3 NC_004065.1 + 150178 0.66 0.948444
Target:  5'- cUUguGGAugcGCAGCUCGuuGUGUCGUUUGCg -3'
miRNA:   3'- -AGguCCU---CGUCGGGC--UAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 61980 0.66 0.946759
Target:  5'- aCCAGGAGCAGCaCCagcagccccCGCgaaCACa -3'
miRNA:   3'- aGGUCCUCGUCG-GGcuaua----GCGa--GUG- -5'
15848 5' -56.3 NC_004065.1 + 169126 0.66 0.944164
Target:  5'- gCCGcGGccAGCAGuuCCCGAga-CGCUCGCg -3'
miRNA:   3'- aGGU-CC--UCGUC--GGGCUauaGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 43096 0.66 0.944164
Target:  5'- gUCCGGGcauccGCgacccGGCgCCGAUccgCGCUCGCg -3'
miRNA:   3'- -AGGUCCu----CG-----UCG-GGCUAua-GCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 181356 0.66 0.944164
Target:  5'- uUCCAGGA-CGGCCUGc-GUCgGCUCGa -3'
miRNA:   3'- -AGGUCCUcGUCGGGCuaUAG-CGAGUg -5'
15848 5' -56.3 NC_004065.1 + 189085 0.66 0.939659
Target:  5'- -gCGGGGGCucgaggaccucGCCCGGUGUCucuguGCUCAg -3'
miRNA:   3'- agGUCCUCGu----------CGGGCUAUAG-----CGAGUg -5'
15848 5' -56.3 NC_004065.1 + 148796 0.66 0.934927
Target:  5'- cCCAGGAacgacgaccgGCAGUCCGAguccgCGCgguacugCGCg -3'
miRNA:   3'- aGGUCCU----------CGUCGGGCUaua--GCGa------GUG- -5'
15848 5' -56.3 NC_004065.1 + 196648 0.66 0.934927
Target:  5'- aUCCAGGGGCcaguAGCgCgCGGcGUCuCUCACg -3'
miRNA:   3'- -AGGUCCUCG----UCG-G-GCUaUAGcGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 99297 0.66 0.929965
Target:  5'- aCgAGGGGCacauaGGcCCCGAUGUCgauguugguggGCUCGCc -3'
miRNA:   3'- aGgUCCUCG-----UC-GGGCUAUAG-----------CGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 227266 0.66 0.929965
Target:  5'- gUCCAGaGAcaCAGCCUuaguacacauauGGUAUCGUUCACc -3'
miRNA:   3'- -AGGUC-CUc-GUCGGG------------CUAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 100035 0.66 0.928432
Target:  5'- gCCucGGGGCgguauccuccgcagAGCCUGAcccUCGCUCGCg -3'
miRNA:   3'- aGGu-CCUCG--------------UCGGGCUau-AGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 108954 0.66 0.924774
Target:  5'- cUCGGGAGUGGUguaCG-UGUCGUUCGCg -3'
miRNA:   3'- aGGUCCUCGUCGg--GCuAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 43796 0.66 0.924774
Target:  5'- gCCAGGGGCAGC-----AUCGCUC-Ca -3'
miRNA:   3'- aGGUCCUCGUCGggcuaUAGCGAGuG- -5'
15848 5' -56.3 NC_004065.1 + 112775 0.67 0.913704
Target:  5'- -aCAGGAGacgaAGUaccugaacaCCGGUcuGUCGCUCGCg -3'
miRNA:   3'- agGUCCUCg---UCG---------GGCUA--UAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 141002 0.67 0.907826
Target:  5'- aCCGGcAGCuGCCUGAgacacaaccucgUGUCGUUCGCc -3'
miRNA:   3'- aGGUCcUCGuCGGGCU------------AUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 146850 0.67 0.901723
Target:  5'- gCCGGGAGC-GCCUGGUcugcAUCGg-CGCg -3'
miRNA:   3'- aGGUCCUCGuCGGGCUA----UAGCgaGUG- -5'
15848 5' -56.3 NC_004065.1 + 127214 0.67 0.901723
Target:  5'- gUUCGGGAGCggcGGCCgCGAggAUCGggCGCg -3'
miRNA:   3'- -AGGUCCUCG---UCGG-GCUa-UAGCgaGUG- -5'
15848 5' -56.3 NC_004065.1 + 101561 0.67 0.901723
Target:  5'- -gCAGuGGUAGCCUGAUcgCGCcCGCg -3'
miRNA:   3'- agGUCcUCGUCGGGCUAuaGCGaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.