miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15848 5' -56.3 NC_004065.1 + 141002 0.67 0.907826
Target:  5'- aCCGGcAGCuGCCUGAgacacaaccucgUGUCGUUCGCc -3'
miRNA:   3'- aGGUCcUCGuCGGGCU------------AUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 87171 0.68 0.867919
Target:  5'- gUCCAGGAGCcccuGCaCCGcgcgGUCGUcgCGCg -3'
miRNA:   3'- -AGGUCCUCGu---CG-GGCua--UAGCGa-GUG- -5'
15848 5' -56.3 NC_004065.1 + 209147 0.68 0.888848
Target:  5'- cCCAGcgccGCGGCC--GUGUCGCUCGCc -3'
miRNA:   3'- aGGUCcu--CGUCGGgcUAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 211583 0.68 0.888848
Target:  5'- aUCCGGcGGCuGUCCGAggucUCGCUCGu -3'
miRNA:   3'- -AGGUCcUCGuCGGGCUau--AGCGAGUg -5'
15848 5' -56.3 NC_004065.1 + 78103 0.68 0.852941
Target:  5'- cUUgAGGGGCAGCCCGAacUCGaugUGCu -3'
miRNA:   3'- -AGgUCCUCGUCGGGCUauAGCga-GUG- -5'
15848 5' -56.3 NC_004065.1 + 203391 0.68 0.875106
Target:  5'- uUCCGGGAcGCugcuCCCGcUGUCGC-CGCa -3'
miRNA:   3'- -AGGUCCU-CGuc--GGGCuAUAGCGaGUG- -5'
15848 5' -56.3 NC_004065.1 + 4280 0.68 0.860529
Target:  5'- gCUGGGGGUAGCCaCGAcggcgUGUCGUUCuCa -3'
miRNA:   3'- aGGUCCUCGUCGG-GCU-----AUAGCGAGuG- -5'
15848 5' -56.3 NC_004065.1 + 196713 0.68 0.852941
Target:  5'- aUCCGGGGGUguacAGCgCGAcGUCGCgccCGCu -3'
miRNA:   3'- -AGGUCCUCG----UCGgGCUaUAGCGa--GUG- -5'
15848 5' -56.3 NC_004065.1 + 184901 0.68 0.852941
Target:  5'- aUCGGGAGCGggcGCCCGG-GUgGCUCGg -3'
miRNA:   3'- aGGUCCUCGU---CGGGCUaUAgCGAGUg -5'
15848 5' -56.3 NC_004065.1 + 159347 0.69 0.82905
Target:  5'- gUCCAGGcccucgGGCAGCCUGAUGcggUGCUgGg -3'
miRNA:   3'- -AGGUCC------UCGUCGGGCUAUa--GCGAgUg -5'
15848 5' -56.3 NC_004065.1 + 5736 0.69 0.812253
Target:  5'- gUCGGGAagaucGCAGCCuCGGUAUCGC-CGa -3'
miRNA:   3'- aGGUCCU-----CGUCGG-GCUAUAGCGaGUg -5'
15848 5' -56.3 NC_004065.1 + 52247 0.69 0.819893
Target:  5'- cCCAGaggcgaaGAGCAGCgCUGGUcguUCGCUUACa -3'
miRNA:   3'- aGGUC-------CUCGUCG-GGCUAu--AGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 6031 0.69 0.82905
Target:  5'- cCCAGauuacAGCGGUCCGGacacGUUGCUCACa -3'
miRNA:   3'- aGGUCc----UCGUCGGGCUa---UAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 112855 0.7 0.79394
Target:  5'- cCCAGGGGCGGaCCCcgucggcgcugucGGUGcCGUUCACc -3'
miRNA:   3'- aGGUCCUCGUC-GGG-------------CUAUaGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 103195 0.7 0.794827
Target:  5'- gUCCAGGAGCAcGCgCuuUGUCGCUagguggcgaCACg -3'
miRNA:   3'- -AGGUCCUCGU-CGgGcuAUAGCGA---------GUG- -5'
15848 5' -56.3 NC_004065.1 + 61444 0.7 0.785898
Target:  5'- cCCAGGGcCGGCCCGAcc-CGCUC-Cg -3'
miRNA:   3'- aGGUCCUcGUCGGGCUauaGCGAGuG- -5'
15848 5' -56.3 NC_004065.1 + 120456 0.7 0.785898
Target:  5'- gCCAGGAgacagGCGGCCaccuCGAgGUCGCUgACg -3'
miRNA:   3'- aGGUCCU-----CGUCGG----GCUaUAGCGAgUG- -5'
15848 5' -56.3 NC_004065.1 + 179341 0.7 0.794827
Target:  5'- -gCAGGAGCAGCCC-AUGgacCUCACc -3'
miRNA:   3'- agGUCCUCGUCGGGcUAUagcGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 90745 0.71 0.729838
Target:  5'- gCUcGGAGCAGCgucCCGAUGUCGUagACg -3'
miRNA:   3'- aGGuCCUCGUCG---GGCUAUAGCGagUG- -5'
15848 5' -56.3 NC_004065.1 + 42601 0.71 0.700595
Target:  5'- cUUCAGGAGCGcGCUgGGgugCGCUCGCc -3'
miRNA:   3'- -AGGUCCUCGU-CGGgCUauaGCGAGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.