Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 15848 | 5' | -56.3 | NC_004065.1 | + | 110048 | 0.72 | 0.660869 |
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Target: 5'- cUCCAGGAGCAGCacuaCCucagGUCgggGCUCACg -3' miRNA: 3'- -AGGUCCUCGUCG----GGcua-UAG---CGAGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 195103 | 0.72 | 0.659869 |
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Target: 5'- cCCAGGGGCGucagcucGCCggCGGUGUCGC-CGCa -3' miRNA: 3'- aGGUCCUCGU-------CGG--GCUAUAGCGaGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 84679 | 0.73 | 0.64084 |
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Target: 5'- aCCGGGGGCAGCCgagaugaggCGcccugugucgaGUGUCGCUCGg -3' miRNA: 3'- aGGUCCUCGUCGG---------GC-----------UAUAGCGAGUg -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 138318 | 0.74 | 0.540459 |
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Target: 5'- -gCGGGAGCucgcggacaucguGGCCgCGAUGUCGCUCuGCg -3' miRNA: 3'- agGUCCUCG-------------UCGG-GCUAUAGCGAG-UG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 81639 | 0.74 | 0.570912 |
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Target: 5'- gUCCAGGAcaucaGCAGCaugucuCUGGUGUCGCUgACg -3' miRNA: 3'- -AGGUCCU-----CGUCG------GGCUAUAGCGAgUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 6171 | 0.75 | 0.493536 |
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Target: 5'- gCCGGGccgGGCGGCCgaguaCGAguUGUCGCUCGCg -3' miRNA: 3'- aGGUCC---UCGUCGG-----GCU--AUAGCGAGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 144191 | 0.76 | 0.447672 |
|
Target: 5'- gUCCAGG-GCcagGGCUCGAUAUCGCUUguuGCg -3' miRNA: 3'- -AGGUCCuCG---UCGGGCUAUAGCGAG---UG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 137999 | 0.78 | 0.371525 |
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Target: 5'- cUCCGGGuGUacGGUCUGAUAUCGCUUGCg -3' miRNA: 3'- -AGGUCCuCG--UCGGGCUAUAGCGAGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 87336 | 1.1 | 0.003428 |
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Target: 5'- gUCCAGGAGCAGCCCGAUAUCGCUCACu -3' miRNA: 3'- -AGGUCCUCGUCGGGCUAUAGCGAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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