miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15848 5' -56.3 NC_004065.1 + 184901 0.68 0.852941
Target:  5'- aUCGGGAGCGggcGCCCGG-GUgGCUCGg -3'
miRNA:   3'- aGGUCCUCGU---CGGGCUaUAgCGAGUg -5'
15848 5' -56.3 NC_004065.1 + 196713 0.68 0.852941
Target:  5'- aUCCGGGGGUguacAGCgCGAcGUCGCgccCGCu -3'
miRNA:   3'- -AGGUCCUCG----UCGgGCUaUAGCGa--GUG- -5'
15848 5' -56.3 NC_004065.1 + 78103 0.68 0.852941
Target:  5'- cUUgAGGGGCAGCCCGAacUCGaugUGCu -3'
miRNA:   3'- -AGgUCCUCGUCGGGCUauAGCga-GUG- -5'
15848 5' -56.3 NC_004065.1 + 4280 0.68 0.860529
Target:  5'- gCUGGGGGUAGCCaCGAcggcgUGUCGUUCuCa -3'
miRNA:   3'- aGGUCCUCGUCGG-GCU-----AUAGCGAGuG- -5'
15848 5' -56.3 NC_004065.1 + 87171 0.68 0.867919
Target:  5'- gUCCAGGAGCcccuGCaCCGcgcgGUCGUcgCGCg -3'
miRNA:   3'- -AGGUCCUCGu---CG-GGCua--UAGCGa-GUG- -5'
15848 5' -56.3 NC_004065.1 + 203391 0.68 0.875106
Target:  5'- uUCCGGGAcGCugcuCCCGcUGUCGC-CGCa -3'
miRNA:   3'- -AGGUCCU-CGuc--GGGCuAUAGCGaGUG- -5'
15848 5' -56.3 NC_004065.1 + 209147 0.68 0.888848
Target:  5'- cCCAGcgccGCGGCC--GUGUCGCUCGCc -3'
miRNA:   3'- aGGUCcu--CGUCGGgcUAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 211583 0.68 0.888848
Target:  5'- aUCCGGcGGCuGUCCGAggucUCGCUCGu -3'
miRNA:   3'- -AGGUCcUCGuCGGGCUau--AGCGAGUg -5'
15848 5' -56.3 NC_004065.1 + 150430 0.67 0.897953
Target:  5'- cCCGGGGGC-GCCCucccuuaucucgauuGAUAUCGUgUACg -3'
miRNA:   3'- aGGUCCUCGuCGGG---------------CUAUAGCGaGUG- -5'
15848 5' -56.3 NC_004065.1 + 127214 0.67 0.901723
Target:  5'- gUUCGGGAGCggcGGCCgCGAggAUCGggCGCg -3'
miRNA:   3'- -AGGUCCUCG---UCGG-GCUa-UAGCgaGUG- -5'
15848 5' -56.3 NC_004065.1 + 146850 0.67 0.901723
Target:  5'- gCCGGGAGC-GCCUGGUcugcAUCGg-CGCg -3'
miRNA:   3'- aGGUCCUCGuCGGGCUA----UAGCgaGUG- -5'
15848 5' -56.3 NC_004065.1 + 101561 0.67 0.901723
Target:  5'- -gCAGuGGUAGCCUGAUcgCGCcCGCg -3'
miRNA:   3'- agGUCcUCGUCGGGCUAuaGCGaGUG- -5'
15848 5' -56.3 NC_004065.1 + 141002 0.67 0.907826
Target:  5'- aCCGGcAGCuGCCUGAgacacaaccucgUGUCGUUCGCc -3'
miRNA:   3'- aGGUCcUCGuCGGGCU------------AUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 112775 0.67 0.913704
Target:  5'- -aCAGGAGacgaAGUaccugaacaCCGGUcuGUCGCUCGCg -3'
miRNA:   3'- agGUCCUCg---UCG---------GGCUA--UAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 108954 0.66 0.924774
Target:  5'- cUCGGGAGUGGUguaCG-UGUCGUUCGCg -3'
miRNA:   3'- aGGUCCUCGUCGg--GCuAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 43796 0.66 0.924774
Target:  5'- gCCAGGGGCAGC-----AUCGCUC-Ca -3'
miRNA:   3'- aGGUCCUCGUCGggcuaUAGCGAGuG- -5'
15848 5' -56.3 NC_004065.1 + 100035 0.66 0.928432
Target:  5'- gCCucGGGGCgguauccuccgcagAGCCUGAcccUCGCUCGCg -3'
miRNA:   3'- aGGu-CCUCG--------------UCGGGCUau-AGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 99297 0.66 0.929965
Target:  5'- aCgAGGGGCacauaGGcCCCGAUGUCgauguugguggGCUCGCc -3'
miRNA:   3'- aGgUCCUCG-----UC-GGGCUAUAG-----------CGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 227266 0.66 0.929965
Target:  5'- gUCCAGaGAcaCAGCCUuaguacacauauGGUAUCGUUCACc -3'
miRNA:   3'- -AGGUC-CUc-GUCGGG------------CUAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 148796 0.66 0.934927
Target:  5'- cCCAGGAacgacgaccgGCAGUCCGAguccgCGCgguacugCGCg -3'
miRNA:   3'- aGGUCCU----------CGUCGGGCUaua--GCGa------GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.