Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 170947 | 0.66 | 0.948444 |
Target: 5'- gCC-GGcGC-GCCgCGAUcUCGCUCACa -3' miRNA: 3'- aGGuCCuCGuCGG-GCUAuAGCGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 145739 | 0.66 | 0.948444 |
Target: 5'- -gCGGGAGCGGUgaugagugcgCCGAUcgcGUCGCgCGCc -3' miRNA: 3'- agGUCCUCGUCG----------GGCUA---UAGCGaGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 150178 | 0.66 | 0.948444 |
Target: 5'- cUUguGGAugcGCAGCUCGuuGUGUCGUUUGCg -3' miRNA: 3'- -AGguCCU---CGUCGGGC--UAUAGCGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 61980 | 0.66 | 0.946759 |
Target: 5'- aCCAGGAGCAGCaCCagcagccccCGCgaaCACa -3' miRNA: 3'- aGGUCCUCGUCG-GGcuaua----GCGa--GUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 169126 | 0.66 | 0.944164 |
Target: 5'- gCCGcGGccAGCAGuuCCCGAga-CGCUCGCg -3' miRNA: 3'- aGGU-CC--UCGUC--GGGCUauaGCGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 43096 | 0.66 | 0.944164 |
Target: 5'- gUCCGGGcauccGCgacccGGCgCCGAUccgCGCUCGCg -3' miRNA: 3'- -AGGUCCu----CG-----UCG-GGCUAua-GCGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 181356 | 0.66 | 0.944164 |
Target: 5'- uUCCAGGA-CGGCCUGc-GUCgGCUCGa -3' miRNA: 3'- -AGGUCCUcGUCGGGCuaUAG-CGAGUg -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 189085 | 0.66 | 0.939659 |
Target: 5'- -gCGGGGGCucgaggaccucGCCCGGUGUCucuguGCUCAg -3' miRNA: 3'- agGUCCUCGu----------CGGGCUAUAG-----CGAGUg -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 148796 | 0.66 | 0.934927 |
Target: 5'- cCCAGGAacgacgaccgGCAGUCCGAguccgCGCgguacugCGCg -3' miRNA: 3'- aGGUCCU----------CGUCGGGCUaua--GCGa------GUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 196648 | 0.66 | 0.934927 |
Target: 5'- aUCCAGGGGCcaguAGCgCgCGGcGUCuCUCACg -3' miRNA: 3'- -AGGUCCUCG----UCG-G-GCUaUAGcGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 99297 | 0.66 | 0.929965 |
Target: 5'- aCgAGGGGCacauaGGcCCCGAUGUCgauguugguggGCUCGCc -3' miRNA: 3'- aGgUCCUCG-----UC-GGGCUAUAG-----------CGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 227266 | 0.66 | 0.929965 |
Target: 5'- gUCCAGaGAcaCAGCCUuaguacacauauGGUAUCGUUCACc -3' miRNA: 3'- -AGGUC-CUc-GUCGGG------------CUAUAGCGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 100035 | 0.66 | 0.928432 |
Target: 5'- gCCucGGGGCgguauccuccgcagAGCCUGAcccUCGCUCGCg -3' miRNA: 3'- aGGu-CCUCG--------------UCGGGCUau-AGCGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 108954 | 0.66 | 0.924774 |
Target: 5'- cUCGGGAGUGGUguaCG-UGUCGUUCGCg -3' miRNA: 3'- aGGUCCUCGUCGg--GCuAUAGCGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 43796 | 0.66 | 0.924774 |
Target: 5'- gCCAGGGGCAGC-----AUCGCUC-Ca -3' miRNA: 3'- aGGUCCUCGUCGggcuaUAGCGAGuG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 112775 | 0.67 | 0.913704 |
Target: 5'- -aCAGGAGacgaAGUaccugaacaCCGGUcuGUCGCUCGCg -3' miRNA: 3'- agGUCCUCg---UCG---------GGCUA--UAGCGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 141002 | 0.67 | 0.907826 |
Target: 5'- aCCGGcAGCuGCCUGAgacacaaccucgUGUCGUUCGCc -3' miRNA: 3'- aGGUCcUCGuCGGGCU------------AUAGCGAGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 146850 | 0.67 | 0.901723 |
Target: 5'- gCCGGGAGC-GCCUGGUcugcAUCGg-CGCg -3' miRNA: 3'- aGGUCCUCGuCGGGCUA----UAGCgaGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 127214 | 0.67 | 0.901723 |
Target: 5'- gUUCGGGAGCggcGGCCgCGAggAUCGggCGCg -3' miRNA: 3'- -AGGUCCUCG---UCGG-GCUa-UAGCgaGUG- -5' |
|||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 101561 | 0.67 | 0.901723 |
Target: 5'- -gCAGuGGUAGCCUGAUcgCGCcCGCg -3' miRNA: 3'- agGUCcUCGUCGGGCUAuaGCGaGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home