Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 108954 | 0.66 | 0.924774 |
Target: 5'- cUCGGGAGUGGUguaCG-UGUCGUUCGCg -3' miRNA: 3'- aGGUCCUCGUCGg--GCuAUAGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 110048 | 0.72 | 0.660869 |
Target: 5'- cUCCAGGAGCAGCacuaCCucagGUCgggGCUCACg -3' miRNA: 3'- -AGGUCCUCGUCG----GGcua-UAG---CGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 112775 | 0.67 | 0.913704 |
Target: 5'- -aCAGGAGacgaAGUaccugaacaCCGGUcuGUCGCUCGCg -3' miRNA: 3'- agGUCCUCg---UCG---------GGCUA--UAGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 112855 | 0.7 | 0.79394 |
Target: 5'- cCCAGGGGCGGaCCCcgucggcgcugucGGUGcCGUUCACc -3' miRNA: 3'- aGGUCCUCGUC-GGG-------------CUAUaGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 120456 | 0.7 | 0.785898 |
Target: 5'- gCCAGGAgacagGCGGCCaccuCGAgGUCGCUgACg -3' miRNA: 3'- aGGUCCU-----CGUCGG----GCUaUAGCGAgUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 127214 | 0.67 | 0.901723 |
Target: 5'- gUUCGGGAGCggcGGCCgCGAggAUCGggCGCg -3' miRNA: 3'- -AGGUCCUCG---UCGG-GCUa-UAGCgaGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 137999 | 0.78 | 0.371525 |
Target: 5'- cUCCGGGuGUacGGUCUGAUAUCGCUUGCg -3' miRNA: 3'- -AGGUCCuCG--UCGGGCUAUAGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 138318 | 0.74 | 0.540459 |
Target: 5'- -gCGGGAGCucgcggacaucguGGCCgCGAUGUCGCUCuGCg -3' miRNA: 3'- agGUCCUCG-------------UCGG-GCUAUAGCGAG-UG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 141002 | 0.67 | 0.907826 |
Target: 5'- aCCGGcAGCuGCCUGAgacacaaccucgUGUCGUUCGCc -3' miRNA: 3'- aGGUCcUCGuCGGGCU------------AUAGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 144191 | 0.76 | 0.447672 |
Target: 5'- gUCCAGG-GCcagGGCUCGAUAUCGCUUguuGCg -3' miRNA: 3'- -AGGUCCuCG---UCGGGCUAUAGCGAG---UG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 145739 | 0.66 | 0.948444 |
Target: 5'- -gCGGGAGCGGUgaugagugcgCCGAUcgcGUCGCgCGCc -3' miRNA: 3'- agGUCCUCGUCG----------GGCUA---UAGCGaGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 146850 | 0.67 | 0.901723 |
Target: 5'- gCCGGGAGC-GCCUGGUcugcAUCGg-CGCg -3' miRNA: 3'- aGGUCCUCGuCGGGCUA----UAGCgaGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 148796 | 0.66 | 0.934927 |
Target: 5'- cCCAGGAacgacgaccgGCAGUCCGAguccgCGCgguacugCGCg -3' miRNA: 3'- aGGUCCU----------CGUCGGGCUaua--GCGa------GUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 150178 | 0.66 | 0.948444 |
Target: 5'- cUUguGGAugcGCAGCUCGuuGUGUCGUUUGCg -3' miRNA: 3'- -AGguCCU---CGUCGGGC--UAUAGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 150430 | 0.67 | 0.897953 |
Target: 5'- cCCGGGGGC-GCCCucccuuaucucgauuGAUAUCGUgUACg -3' miRNA: 3'- aGGUCCUCGuCGGG---------------CUAUAGCGaGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 159347 | 0.69 | 0.82905 |
Target: 5'- gUCCAGGcccucgGGCAGCCUGAUGcggUGCUgGg -3' miRNA: 3'- -AGGUCC------UCGUCGGGCUAUa--GCGAgUg -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 169126 | 0.66 | 0.944164 |
Target: 5'- gCCGcGGccAGCAGuuCCCGAga-CGCUCGCg -3' miRNA: 3'- aGGU-CC--UCGUC--GGGCUauaGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 170947 | 0.66 | 0.948444 |
Target: 5'- gCC-GGcGC-GCCgCGAUcUCGCUCACa -3' miRNA: 3'- aGGuCCuCGuCGG-GCUAuAGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 179341 | 0.7 | 0.794827 |
Target: 5'- -gCAGGAGCAGCCC-AUGgacCUCACc -3' miRNA: 3'- agGUCCUCGUCGGGcUAUagcGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 181356 | 0.66 | 0.944164 |
Target: 5'- uUCCAGGA-CGGCCUGc-GUCgGCUCGa -3' miRNA: 3'- -AGGUCCUcGUCGGGCuaUAG-CGAGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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