Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15848 | 5' | -56.3 | NC_004065.1 | + | 227266 | 0.66 | 0.929965 |
Target: 5'- gUCCAGaGAcaCAGCCUuaguacacauauGGUAUCGUUCACc -3' miRNA: 3'- -AGGUC-CUc-GUCGGG------------CUAUAGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 211583 | 0.68 | 0.888848 |
Target: 5'- aUCCGGcGGCuGUCCGAggucUCGCUCGu -3' miRNA: 3'- -AGGUCcUCGuCGGGCUau--AGCGAGUg -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 209147 | 0.68 | 0.888848 |
Target: 5'- cCCAGcgccGCGGCC--GUGUCGCUCGCc -3' miRNA: 3'- aGGUCcu--CGUCGGgcUAUAGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 203391 | 0.68 | 0.875106 |
Target: 5'- uUCCGGGAcGCugcuCCCGcUGUCGC-CGCa -3' miRNA: 3'- -AGGUCCU-CGuc--GGGCuAUAGCGaGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 196713 | 0.68 | 0.852941 |
Target: 5'- aUCCGGGGGUguacAGCgCGAcGUCGCgccCGCu -3' miRNA: 3'- -AGGUCCUCG----UCGgGCUaUAGCGa--GUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 196648 | 0.66 | 0.934927 |
Target: 5'- aUCCAGGGGCcaguAGCgCgCGGcGUCuCUCACg -3' miRNA: 3'- -AGGUCCUCG----UCG-G-GCUaUAGcGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 195103 | 0.72 | 0.659869 |
Target: 5'- cCCAGGGGCGucagcucGCCggCGGUGUCGC-CGCa -3' miRNA: 3'- aGGUCCUCGU-------CGG--GCUAUAGCGaGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 189085 | 0.66 | 0.939659 |
Target: 5'- -gCGGGGGCucgaggaccucGCCCGGUGUCucuguGCUCAg -3' miRNA: 3'- agGUCCUCGu----------CGGGCUAUAG-----CGAGUg -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 184901 | 0.68 | 0.852941 |
Target: 5'- aUCGGGAGCGggcGCCCGG-GUgGCUCGg -3' miRNA: 3'- aGGUCCUCGU---CGGGCUaUAgCGAGUg -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 181356 | 0.66 | 0.944164 |
Target: 5'- uUCCAGGA-CGGCCUGc-GUCgGCUCGa -3' miRNA: 3'- -AGGUCCUcGUCGGGCuaUAG-CGAGUg -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 179341 | 0.7 | 0.794827 |
Target: 5'- -gCAGGAGCAGCCC-AUGgacCUCACc -3' miRNA: 3'- agGUCCUCGUCGGGcUAUagcGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 170947 | 0.66 | 0.948444 |
Target: 5'- gCC-GGcGC-GCCgCGAUcUCGCUCACa -3' miRNA: 3'- aGGuCCuCGuCGG-GCUAuAGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 169126 | 0.66 | 0.944164 |
Target: 5'- gCCGcGGccAGCAGuuCCCGAga-CGCUCGCg -3' miRNA: 3'- aGGU-CC--UCGUC--GGGCUauaGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 159347 | 0.69 | 0.82905 |
Target: 5'- gUCCAGGcccucgGGCAGCCUGAUGcggUGCUgGg -3' miRNA: 3'- -AGGUCC------UCGUCGGGCUAUa--GCGAgUg -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 150430 | 0.67 | 0.897953 |
Target: 5'- cCCGGGGGC-GCCCucccuuaucucgauuGAUAUCGUgUACg -3' miRNA: 3'- aGGUCCUCGuCGGG---------------CUAUAGCGaGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 150178 | 0.66 | 0.948444 |
Target: 5'- cUUguGGAugcGCAGCUCGuuGUGUCGUUUGCg -3' miRNA: 3'- -AGguCCU---CGUCGGGC--UAUAGCGAGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 148796 | 0.66 | 0.934927 |
Target: 5'- cCCAGGAacgacgaccgGCAGUCCGAguccgCGCgguacugCGCg -3' miRNA: 3'- aGGUCCU----------CGUCGGGCUaua--GCGa------GUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 146850 | 0.67 | 0.901723 |
Target: 5'- gCCGGGAGC-GCCUGGUcugcAUCGg-CGCg -3' miRNA: 3'- aGGUCCUCGuCGGGCUA----UAGCgaGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 145739 | 0.66 | 0.948444 |
Target: 5'- -gCGGGAGCGGUgaugagugcgCCGAUcgcGUCGCgCGCc -3' miRNA: 3'- agGUCCUCGUCG----------GGCUA---UAGCGaGUG- -5' |
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15848 | 5' | -56.3 | NC_004065.1 | + | 144191 | 0.76 | 0.447672 |
Target: 5'- gUCCAGG-GCcagGGCUCGAUAUCGCUUguuGCg -3' miRNA: 3'- -AGGUCCuCG---UCGGGCUAUAGCGAG---UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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