miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15848 5' -56.3 NC_004065.1 + 141002 0.67 0.907826
Target:  5'- aCCGGcAGCuGCCUGAgacacaaccucgUGUCGUUCGCc -3'
miRNA:   3'- aGGUCcUCGuCGGGCU------------AUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 138318 0.74 0.540459
Target:  5'- -gCGGGAGCucgcggacaucguGGCCgCGAUGUCGCUCuGCg -3'
miRNA:   3'- agGUCCUCG-------------UCGG-GCUAUAGCGAG-UG- -5'
15848 5' -56.3 NC_004065.1 + 137999 0.78 0.371525
Target:  5'- cUCCGGGuGUacGGUCUGAUAUCGCUUGCg -3'
miRNA:   3'- -AGGUCCuCG--UCGGGCUAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 127214 0.67 0.901723
Target:  5'- gUUCGGGAGCggcGGCCgCGAggAUCGggCGCg -3'
miRNA:   3'- -AGGUCCUCG---UCGG-GCUa-UAGCgaGUG- -5'
15848 5' -56.3 NC_004065.1 + 120456 0.7 0.785898
Target:  5'- gCCAGGAgacagGCGGCCaccuCGAgGUCGCUgACg -3'
miRNA:   3'- aGGUCCU-----CGUCGG----GCUaUAGCGAgUG- -5'
15848 5' -56.3 NC_004065.1 + 112855 0.7 0.79394
Target:  5'- cCCAGGGGCGGaCCCcgucggcgcugucGGUGcCGUUCACc -3'
miRNA:   3'- aGGUCCUCGUC-GGG-------------CUAUaGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 112775 0.67 0.913704
Target:  5'- -aCAGGAGacgaAGUaccugaacaCCGGUcuGUCGCUCGCg -3'
miRNA:   3'- agGUCCUCg---UCG---------GGCUA--UAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 110048 0.72 0.660869
Target:  5'- cUCCAGGAGCAGCacuaCCucagGUCgggGCUCACg -3'
miRNA:   3'- -AGGUCCUCGUCG----GGcua-UAG---CGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 108954 0.66 0.924774
Target:  5'- cUCGGGAGUGGUguaCG-UGUCGUUCGCg -3'
miRNA:   3'- aGGUCCUCGUCGg--GCuAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 103195 0.7 0.794827
Target:  5'- gUCCAGGAGCAcGCgCuuUGUCGCUagguggcgaCACg -3'
miRNA:   3'- -AGGUCCUCGU-CGgGcuAUAGCGA---------GUG- -5'
15848 5' -56.3 NC_004065.1 + 101561 0.67 0.901723
Target:  5'- -gCAGuGGUAGCCUGAUcgCGCcCGCg -3'
miRNA:   3'- agGUCcUCGUCGGGCUAuaGCGaGUG- -5'
15848 5' -56.3 NC_004065.1 + 100035 0.66 0.928432
Target:  5'- gCCucGGGGCgguauccuccgcagAGCCUGAcccUCGCUCGCg -3'
miRNA:   3'- aGGu-CCUCG--------------UCGGGCUau-AGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 99297 0.66 0.929965
Target:  5'- aCgAGGGGCacauaGGcCCCGAUGUCgauguugguggGCUCGCc -3'
miRNA:   3'- aGgUCCUCG-----UC-GGGCUAUAG-----------CGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 90745 0.71 0.729838
Target:  5'- gCUcGGAGCAGCgucCCGAUGUCGUagACg -3'
miRNA:   3'- aGGuCCUCGUCG---GGCUAUAGCGagUG- -5'
15848 5' -56.3 NC_004065.1 + 87336 1.1 0.003428
Target:  5'- gUCCAGGAGCAGCCCGAUAUCGCUCACu -3'
miRNA:   3'- -AGGUCCUCGUCGGGCUAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 87171 0.68 0.867919
Target:  5'- gUCCAGGAGCcccuGCaCCGcgcgGUCGUcgCGCg -3'
miRNA:   3'- -AGGUCCUCGu---CG-GGCua--UAGCGa-GUG- -5'
15848 5' -56.3 NC_004065.1 + 84679 0.73 0.64084
Target:  5'- aCCGGGGGCAGCCgagaugaggCGcccugugucgaGUGUCGCUCGg -3'
miRNA:   3'- aGGUCCUCGUCGG---------GC-----------UAUAGCGAGUg -5'
15848 5' -56.3 NC_004065.1 + 81639 0.74 0.570912
Target:  5'- gUCCAGGAcaucaGCAGCaugucuCUGGUGUCGCUgACg -3'
miRNA:   3'- -AGGUCCU-----CGUCG------GGCUAUAGCGAgUG- -5'
15848 5' -56.3 NC_004065.1 + 78103 0.68 0.852941
Target:  5'- cUUgAGGGGCAGCCCGAacUCGaugUGCu -3'
miRNA:   3'- -AGgUCCUCGUCGGGCUauAGCga-GUG- -5'
15848 5' -56.3 NC_004065.1 + 61980 0.66 0.946759
Target:  5'- aCCAGGAGCAGCaCCagcagccccCGCgaaCACa -3'
miRNA:   3'- aGGUCCUCGUCG-GGcuaua----GCGa--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.