Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15848 | 5' | -56.3 | NC_004065.1 | + | 61444 | 0.7 | 0.785898 |
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Target: 5'- cCCAGGGcCGGCCCGAcc-CGCUC-Cg -3' miRNA: 3'- aGGUCCUcGUCGGGCUauaGCGAGuG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 52247 | 0.69 | 0.819893 |
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Target: 5'- cCCAGaggcgaaGAGCAGCgCUGGUcguUCGCUUACa -3' miRNA: 3'- aGGUC-------CUCGUCG-GGCUAu--AGCGAGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 43796 | 0.66 | 0.924774 |
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Target: 5'- gCCAGGGGCAGC-----AUCGCUC-Ca -3' miRNA: 3'- aGGUCCUCGUCGggcuaUAGCGAGuG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 43096 | 0.66 | 0.944164 |
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Target: 5'- gUCCGGGcauccGCgacccGGCgCCGAUccgCGCUCGCg -3' miRNA: 3'- -AGGUCCu----CG-----UCG-GGCUAua-GCGAGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 42601 | 0.71 | 0.700595 |
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Target: 5'- cUUCAGGAGCGcGCUgGGgugCGCUCGCc -3' miRNA: 3'- -AGGUCCUCGU-CGGgCUauaGCGAGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 6171 | 0.75 | 0.493536 |
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Target: 5'- gCCGGGccgGGCGGCCgaguaCGAguUGUCGCUCGCg -3' miRNA: 3'- aGGUCC---UCGUCGG-----GCU--AUAGCGAGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 6031 | 0.69 | 0.82905 |
|
Target: 5'- cCCAGauuacAGCGGUCCGGacacGUUGCUCACa -3' miRNA: 3'- aGGUCc----UCGUCGGGCUa---UAGCGAGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 5736 | 0.69 | 0.812253 |
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Target: 5'- gUCGGGAagaucGCAGCCuCGGUAUCGC-CGa -3' miRNA: 3'- aGGUCCU-----CGUCGG-GCUAUAGCGaGUg -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 4280 | 0.68 | 0.860529 |
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Target: 5'- gCUGGGGGUAGCCaCGAcggcgUGUCGUUCuCa -3' miRNA: 3'- aGGUCCUCGUCGG-GCU-----AUAGCGAGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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