miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15848 5' -56.3 NC_004065.1 + 87171 0.68 0.867919
Target:  5'- gUCCAGGAGCcccuGCaCCGcgcgGUCGUcgCGCg -3'
miRNA:   3'- -AGGUCCUCGu---CG-GGCua--UAGCGa-GUG- -5'
15848 5' -56.3 NC_004065.1 + 203391 0.68 0.875106
Target:  5'- uUCCGGGAcGCugcuCCCGcUGUCGC-CGCa -3'
miRNA:   3'- -AGGUCCU-CGuc--GGGCuAUAGCGaGUG- -5'
15848 5' -56.3 NC_004065.1 + 211583 0.68 0.888848
Target:  5'- aUCCGGcGGCuGUCCGAggucUCGCUCGu -3'
miRNA:   3'- -AGGUCcUCGuCGGGCUau--AGCGAGUg -5'
15848 5' -56.3 NC_004065.1 + 209147 0.68 0.888848
Target:  5'- cCCAGcgccGCGGCC--GUGUCGCUCGCc -3'
miRNA:   3'- aGGUCcu--CGUCGGgcUAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 150430 0.67 0.897953
Target:  5'- cCCGGGGGC-GCCCucccuuaucucgauuGAUAUCGUgUACg -3'
miRNA:   3'- aGGUCCUCGuCGGG---------------CUAUAGCGaGUG- -5'
15848 5' -56.3 NC_004065.1 + 101561 0.67 0.901723
Target:  5'- -gCAGuGGUAGCCUGAUcgCGCcCGCg -3'
miRNA:   3'- agGUCcUCGUCGGGCUAuaGCGaGUG- -5'
15848 5' -56.3 NC_004065.1 + 146850 0.67 0.901723
Target:  5'- gCCGGGAGC-GCCUGGUcugcAUCGg-CGCg -3'
miRNA:   3'- aGGUCCUCGuCGGGCUA----UAGCgaGUG- -5'
15848 5' -56.3 NC_004065.1 + 112775 0.67 0.913704
Target:  5'- -aCAGGAGacgaAGUaccugaacaCCGGUcuGUCGCUCGCg -3'
miRNA:   3'- agGUCCUCg---UCG---------GGCUA--UAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 43796 0.66 0.924774
Target:  5'- gCCAGGGGCAGC-----AUCGCUC-Ca -3'
miRNA:   3'- aGGUCCUCGUCGggcuaUAGCGAGuG- -5'
15848 5' -56.3 NC_004065.1 + 4280 0.68 0.860529
Target:  5'- gCUGGGGGUAGCCaCGAcggcgUGUCGUUCuCa -3'
miRNA:   3'- aGGUCCUCGUCGG-GCU-----AUAGCGAGuG- -5'
15848 5' -56.3 NC_004065.1 + 78103 0.68 0.852941
Target:  5'- cUUgAGGGGCAGCCCGAacUCGaugUGCu -3'
miRNA:   3'- -AGgUCCUCGUCGGGCUauAGCga-GUG- -5'
15848 5' -56.3 NC_004065.1 + 159347 0.69 0.82905
Target:  5'- gUCCAGGcccucgGGCAGCCUGAUGcggUGCUgGg -3'
miRNA:   3'- -AGGUCC------UCGUCGGGCUAUa--GCGAgUg -5'
15848 5' -56.3 NC_004065.1 + 6171 0.75 0.493536
Target:  5'- gCCGGGccgGGCGGCCgaguaCGAguUGUCGCUCGCg -3'
miRNA:   3'- aGGUCC---UCGUCGG-----GCU--AUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 138318 0.74 0.540459
Target:  5'- -gCGGGAGCucgcggacaucguGGCCgCGAUGUCGCUCuGCg -3'
miRNA:   3'- agGUCCUCG-------------UCGG-GCUAUAGCGAG-UG- -5'
15848 5' -56.3 NC_004065.1 + 81639 0.74 0.570912
Target:  5'- gUCCAGGAcaucaGCAGCaugucuCUGGUGUCGCUgACg -3'
miRNA:   3'- -AGGUCCU-----CGUCG------GGCUAUAGCGAgUG- -5'
15848 5' -56.3 NC_004065.1 + 84679 0.73 0.64084
Target:  5'- aCCGGGGGCAGCCgagaugaggCGcccugugucgaGUGUCGCUCGg -3'
miRNA:   3'- aGGUCCUCGUCGG---------GC-----------UAUAGCGAGUg -5'
15848 5' -56.3 NC_004065.1 + 90745 0.71 0.729838
Target:  5'- gCUcGGAGCAGCgucCCGAUGUCGUagACg -3'
miRNA:   3'- aGGuCCUCGUCG---GGCUAUAGCGagUG- -5'
15848 5' -56.3 NC_004065.1 + 120456 0.7 0.785898
Target:  5'- gCCAGGAgacagGCGGCCaccuCGAgGUCGCUgACg -3'
miRNA:   3'- aGGUCCU-----CGUCGG----GCUaUAGCGAgUG- -5'
15848 5' -56.3 NC_004065.1 + 112855 0.7 0.79394
Target:  5'- cCCAGGGGCGGaCCCcgucggcgcugucGGUGcCGUUCACc -3'
miRNA:   3'- aGGUCCUCGUC-GGG-------------CUAUaGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 179341 0.7 0.794827
Target:  5'- -gCAGGAGCAGCCC-AUGgacCUCACc -3'
miRNA:   3'- agGUCCUCGUCGGGcUAUagcGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.