Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15848 | 5' | -56.3 | NC_004065.1 | + | 90745 | 0.71 | 0.729838 |
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Target: 5'- gCUcGGAGCAGCgucCCGAUGUCGUagACg -3' miRNA: 3'- aGGuCCUCGUCG---GGCUAUAGCGagUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 120456 | 0.7 | 0.785898 |
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Target: 5'- gCCAGGAgacagGCGGCCaccuCGAgGUCGCUgACg -3' miRNA: 3'- aGGUCCU-----CGUCGG----GCUaUAGCGAgUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 112855 | 0.7 | 0.79394 |
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Target: 5'- cCCAGGGGCGGaCCCcgucggcgcugucGGUGcCGUUCACc -3' miRNA: 3'- aGGUCCUCGUC-GGG-------------CUAUaGCGAGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 179341 | 0.7 | 0.794827 |
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Target: 5'- -gCAGGAGCAGCCC-AUGgacCUCACc -3' miRNA: 3'- agGUCCUCGUCGGGcUAUagcGAGUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 159347 | 0.69 | 0.82905 |
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Target: 5'- gUCCAGGcccucgGGCAGCCUGAUGcggUGCUgGg -3' miRNA: 3'- -AGGUCC------UCGUCGGGCUAUa--GCGAgUg -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 78103 | 0.68 | 0.852941 |
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Target: 5'- cUUgAGGGGCAGCCCGAacUCGaugUGCu -3' miRNA: 3'- -AGgUCCUCGUCGGGCUauAGCga-GUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 4280 | 0.68 | 0.860529 |
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Target: 5'- gCUGGGGGUAGCCaCGAcggcgUGUCGUUCuCa -3' miRNA: 3'- aGGUCCUCGUCGG-GCU-----AUAGCGAGuG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 87171 | 0.68 | 0.867919 |
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Target: 5'- gUCCAGGAGCcccuGCaCCGcgcgGUCGUcgCGCg -3' miRNA: 3'- -AGGUCCUCGu---CG-GGCua--UAGCGa-GUG- -5' |
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| 15848 | 5' | -56.3 | NC_004065.1 | + | 87336 | 1.1 | 0.003428 |
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Target: 5'- gUCCAGGAGCAGCCCGAUAUCGCUCACu -3' miRNA: 3'- -AGGUCCUCGUCGGGCUAUAGCGAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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