miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15848 5' -56.3 NC_004065.1 + 108954 0.66 0.924774
Target:  5'- cUCGGGAGUGGUguaCG-UGUCGUUCGCg -3'
miRNA:   3'- aGGUCCUCGUCGg--GCuAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 61980 0.66 0.946759
Target:  5'- aCCAGGAGCAGCaCCagcagccccCGCgaaCACa -3'
miRNA:   3'- aGGUCCUCGUCG-GGcuaua----GCGa--GUG- -5'
15848 5' -56.3 NC_004065.1 + 209147 0.68 0.888848
Target:  5'- cCCAGcgccGCGGCC--GUGUCGCUCGCc -3'
miRNA:   3'- aGGUCcu--CGUCGGgcUAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 99297 0.66 0.929965
Target:  5'- aCgAGGGGCacauaGGcCCCGAUGUCgauguugguggGCUCGCc -3'
miRNA:   3'- aGgUCCUCG-----UC-GGGCUAUAG-----------CGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 189085 0.66 0.939659
Target:  5'- -gCGGGGGCucgaggaccucGCCCGGUGUCucuguGCUCAg -3'
miRNA:   3'- agGUCCUCGu----------CGGGCUAUAG-----CGAGUg -5'
15848 5' -56.3 NC_004065.1 + 181356 0.66 0.944164
Target:  5'- uUCCAGGA-CGGCCUGc-GUCgGCUCGa -3'
miRNA:   3'- -AGGUCCUcGUCGGGCuaUAG-CGAGUg -5'
15848 5' -56.3 NC_004065.1 + 170947 0.66 0.948444
Target:  5'- gCC-GGcGC-GCCgCGAUcUCGCUCACa -3'
miRNA:   3'- aGGuCCuCGuCGG-GCUAuAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 100035 0.66 0.928432
Target:  5'- gCCucGGGGCgguauccuccgcagAGCCUGAcccUCGCUCGCg -3'
miRNA:   3'- aGGu-CCUCG--------------UCGGGCUau-AGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 227266 0.66 0.929965
Target:  5'- gUCCAGaGAcaCAGCCUuaguacacauauGGUAUCGUUCACc -3'
miRNA:   3'- -AGGUC-CUc-GUCGGG------------CUAUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 195103 0.72 0.659869
Target:  5'- cCCAGGGGCGucagcucGCCggCGGUGUCGC-CGCa -3'
miRNA:   3'- aGGUCCUCGU-------CGG--GCUAUAGCGaGUG- -5'
15848 5' -56.3 NC_004065.1 + 42601 0.71 0.700595
Target:  5'- cUUCAGGAGCGcGCUgGGgugCGCUCGCc -3'
miRNA:   3'- -AGGUCCUCGU-CGGgCUauaGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 61444 0.7 0.785898
Target:  5'- cCCAGGGcCGGCCCGAcc-CGCUC-Cg -3'
miRNA:   3'- aGGUCCUcGUCGGGCUauaGCGAGuG- -5'
15848 5' -56.3 NC_004065.1 + 103195 0.7 0.794827
Target:  5'- gUCCAGGAGCAcGCgCuuUGUCGCUagguggcgaCACg -3'
miRNA:   3'- -AGGUCCUCGU-CGgGcuAUAGCGA---------GUG- -5'
15848 5' -56.3 NC_004065.1 + 6031 0.69 0.82905
Target:  5'- cCCAGauuacAGCGGUCCGGacacGUUGCUCACa -3'
miRNA:   3'- aGGUCc----UCGUCGGGCUa---UAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 196713 0.68 0.852941
Target:  5'- aUCCGGGGGUguacAGCgCGAcGUCGCgccCGCu -3'
miRNA:   3'- -AGGUCCUCG----UCGgGCUaUAGCGa--GUG- -5'
15848 5' -56.3 NC_004065.1 + 184901 0.68 0.852941
Target:  5'- aUCGGGAGCGggcGCCCGG-GUgGCUCGg -3'
miRNA:   3'- aGGUCCUCGU---CGGGCUaUAgCGAGUg -5'
15848 5' -56.3 NC_004065.1 + 127214 0.67 0.901723
Target:  5'- gUUCGGGAGCggcGGCCgCGAggAUCGggCGCg -3'
miRNA:   3'- -AGGUCCUCG---UCGG-GCUa-UAGCgaGUG- -5'
15848 5' -56.3 NC_004065.1 + 141002 0.67 0.907826
Target:  5'- aCCGGcAGCuGCCUGAgacacaaccucgUGUCGUUCGCc -3'
miRNA:   3'- aGGUCcUCGuCGGGCU------------AUAGCGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 196648 0.66 0.934927
Target:  5'- aUCCAGGGGCcaguAGCgCgCGGcGUCuCUCACg -3'
miRNA:   3'- -AGGUCCUCG----UCG-G-GCUaUAGcGAGUG- -5'
15848 5' -56.3 NC_004065.1 + 150178 0.66 0.948444
Target:  5'- cUUguGGAugcGCAGCUCGuuGUGUCGUUUGCg -3'
miRNA:   3'- -AGguCCU---CGUCGGGC--UAUAGCGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.