miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1585 5' -54.9 NC_001347.2 + 88038 0.66 0.972479
Target:  5'- cGCUGAgcgGCUGcggaaUGCGGCCCgGGCc-- -3'
miRNA:   3'- uCGAUUa--CGGC-----ACGCUGGGgCUGuuc -5'
1585 5' -54.9 NC_001347.2 + 38247 0.66 0.972479
Target:  5'- cGCUGcUGCUGccGCGuccGCCCCGACc-- -3'
miRNA:   3'- uCGAUuACGGCa-CGC---UGGGGCUGuuc -5'
1585 5' -54.9 NC_001347.2 + 142491 0.66 0.972479
Target:  5'- gGGCaacuccauuUGCUucgGCGugCCCGGCGAGa -3'
miRNA:   3'- -UCGauu------ACGGca-CGCugGGGCUGUUC- -5'
1585 5' -54.9 NC_001347.2 + 154129 0.66 0.966672
Target:  5'- cGCUGGUGCCaccgccguuGUGaCGGCCCgGAUc-- -3'
miRNA:   3'- uCGAUUACGG---------CAC-GCUGGGgCUGuuc -5'
1585 5' -54.9 NC_001347.2 + 96389 0.66 0.966672
Target:  5'- aGGCgGcgGCCGUGCGcaucGCCugccucauCCGACAGa -3'
miRNA:   3'- -UCGaUuaCGGCACGC----UGG--------GGCUGUUc -5'
1585 5' -54.9 NC_001347.2 + 126400 0.66 0.966672
Target:  5'- cAGCUucUGCaCGcGCGACCUgGGCAc- -3'
miRNA:   3'- -UCGAuuACG-GCaCGCUGGGgCUGUuc -5'
1585 5' -54.9 NC_001347.2 + 18352 0.66 0.96636
Target:  5'- cGCUGcgGCCGUGgccaagaCGGCCCgCGAaauGAGc -3'
miRNA:   3'- uCGAUuaCGGCAC-------GCUGGG-GCUg--UUC- -5'
1585 5' -54.9 NC_001347.2 + 66125 0.67 0.956419
Target:  5'- uGUUcAUGCUGUGgGGCgCCGACGc- -3'
miRNA:   3'- uCGAuUACGGCACgCUGgGGCUGUuc -5'
1585 5' -54.9 NC_001347.2 + 197791 0.67 0.956419
Target:  5'- uGCUAcgucaCCGUGUGACgCCgGGCAAGc -3'
miRNA:   3'- uCGAUuac--GGCACGCUG-GGgCUGUUC- -5'
1585 5' -54.9 NC_001347.2 + 138959 0.67 0.944206
Target:  5'- cGCUAGcGCCgGUGgGGCCCgCGGCu-- -3'
miRNA:   3'- uCGAUUaCGG-CACgCUGGG-GCUGuuc -5'
1585 5' -54.9 NC_001347.2 + 5598 0.67 0.939683
Target:  5'- cGGUUAAUGCgGUGgugguaGGCCCgCGAgAAGg -3'
miRNA:   3'- -UCGAUUACGgCACg-----CUGGG-GCUgUUC- -5'
1585 5' -54.9 NC_001347.2 + 18076 0.68 0.929947
Target:  5'- cGGUguacuaGCCGUGCGuccaCCCGACAGc -3'
miRNA:   3'- -UCGauua--CGGCACGCug--GGGCUGUUc -5'
1585 5' -54.9 NC_001347.2 + 78414 0.68 0.914187
Target:  5'- gGGCUGcUGCCGccgccacccggcccgGCGGCgCCCGAgCGGGa -3'
miRNA:   3'- -UCGAUuACGGCa--------------CGCUG-GGGCU-GUUC- -5'
1585 5' -54.9 NC_001347.2 + 142148 0.69 0.907702
Target:  5'- cGCUGGacGCCGagaacuuggauUGCGACCCCGAa--- -3'
miRNA:   3'- uCGAUUa-CGGC-----------ACGCUGGGGCUguuc -5'
1585 5' -54.9 NC_001347.2 + 210465 0.69 0.907702
Target:  5'- gGGCaAAUGCgGgaGCGAUCCCGACc-- -3'
miRNA:   3'- -UCGaUUACGgCa-CGCUGGGGCUGuuc -5'
1585 5' -54.9 NC_001347.2 + 131856 0.69 0.907099
Target:  5'- uGGCUucgGCCcgGUGCGacggaggGCCCCGACGu- -3'
miRNA:   3'- -UCGAuuaCGG--CACGC-------UGGGGCUGUuc -5'
1585 5' -54.9 NC_001347.2 + 225494 0.69 0.888624
Target:  5'- cGCUGcUGCCccgGCGuucuccagaaGCCCCGGCGGGc -3'
miRNA:   3'- uCGAUuACGGca-CGC----------UGGGGCUGUUC- -5'
1585 5' -54.9 NC_001347.2 + 132511 0.69 0.888624
Target:  5'- uGGCUGAUGCCGaGUGuCgUCGACAu- -3'
miRNA:   3'- -UCGAUUACGGCaCGCuGgGGCUGUuc -5'
1585 5' -54.9 NC_001347.2 + 38004 0.69 0.874806
Target:  5'- cAGCaGccGCCGcGCGGCCUCGGCGGc -3'
miRNA:   3'- -UCGaUuaCGGCaCGCUGGGGCUGUUc -5'
1585 5' -54.9 NC_001347.2 + 196144 0.69 0.874806
Target:  5'- cGCUGccUGCCG-GCGGCCCUGugccGCGGGu -3'
miRNA:   3'- uCGAUu-ACGGCaCGCUGGGGC----UGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.