Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15850 | 3' | -56.5 | NC_004065.1 | + | 191604 | 0.73 | 0.649626 |
Target: 5'- cGUCGUaGACGcCUCUCCCGCGaAGuCCGu -3' miRNA: 3'- -CAGUA-CUGC-GAGAGGGUGCaUCcGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 201465 | 0.66 | 0.950352 |
Target: 5'- -gCcgGACGCUC-CCCGCGagaucccGGUCGa -3' miRNA: 3'- caGuaCUGCGAGaGGGUGCau-----CCGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 58319 | 0.66 | 0.937299 |
Target: 5'- cGUCAUGACGCg--Ca-GCGUgcAGGCCa -3' miRNA: 3'- -CAGUACUGCGagaGggUGCA--UCCGGc -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 145778 | 0.67 | 0.926969 |
Target: 5'- gGUCGcgGGCGCUCgcacagaUCCucaugCACGUcGGGCCGg -3' miRNA: 3'- -CAGUa-CUGCGAG-------AGG-----GUGCA-UCCGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 226504 | 0.68 | 0.865152 |
Target: 5'- gGUCu---CGCUCUCCCagGCGaAGGCCc -3' miRNA: 3'- -CAGuacuGCGAGAGGG--UGCaUCCGGc -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 165860 | 0.69 | 0.856267 |
Target: 5'- -gCcgGACGgUCUCUCACGgucccgaaggcgAGGCCGc -3' miRNA: 3'- caGuaCUGCgAGAGGGUGCa-----------UCCGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 109674 | 0.69 | 0.842427 |
Target: 5'- cUCcgGGCGCUCUCCgACGacaucGCCGc -3' miRNA: 3'- cAGuaCUGCGAGAGGgUGCauc--CGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 47704 | 0.69 | 0.842427 |
Target: 5'- cUCAUGACGCUgcgcaUCCCcucgaGCGU-GGCCu -3' miRNA: 3'- cAGUACUGCGAg----AGGG-----UGCAuCCGGc -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 173022 | 0.7 | 0.801056 |
Target: 5'- gGUUcgGAUGCggugCUCUCAUGgcGGCCa -3' miRNA: 3'- -CAGuaCUGCGa---GAGGGUGCauCCGGc -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 75578 | 0.7 | 0.801056 |
Target: 5'- -cCGUGACGUUCgugucgCCgGCGgggggAGGCCGc -3' miRNA: 3'- caGUACUGCGAGa-----GGgUGCa----UCCGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 165454 | 0.7 | 0.801056 |
Target: 5'- aGUCGacGCGCUC-CCCGCGgcGGCUc -3' miRNA: 3'- -CAGUacUGCGAGaGGGUGCauCCGGc -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 181263 | 0.66 | 0.941871 |
Target: 5'- uUCGUGAUGCUCUUCgGCGccaccGGCgGc -3' miRNA: 3'- cAGUACUGCGAGAGGgUGCau---CCGgC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 169342 | 0.66 | 0.937299 |
Target: 5'- aUCAc--CGuCUCgCCCugGUGGGCCGu -3' miRNA: 3'- cAGUacuGC-GAGaGGGugCAUCCGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 98861 | 0.66 | 0.937299 |
Target: 5'- gGUCAUauccaGACGCcgCUCUacgggcggCAgGUAGGCCGa -3' miRNA: 3'- -CAGUA-----CUGCGa-GAGG--------GUgCAUCCGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 102014 | 0.66 | 0.932504 |
Target: 5'- gGUCGuaguUGGCGCggcgggccaccUCggugaCCCGCGgcGGCCGg -3' miRNA: 3'- -CAGU----ACUGCG-----------AGa----GGGUGCauCCGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 222052 | 0.67 | 0.922239 |
Target: 5'- aUCGUGugGUUCUCCguUGUGuGGUgGg -3' miRNA: 3'- cAGUACugCGAGAGGguGCAU-CCGgC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 94406 | 0.67 | 0.91677 |
Target: 5'- --gGUGGCGC-CguagaCCCGCGUGacGGCCGu -3' miRNA: 3'- cagUACUGCGaGa----GGGUGCAU--CCGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 68514 | 0.68 | 0.892673 |
Target: 5'- -gCGgcgGACGCaUCUCCCGg--AGGCCGa -3' miRNA: 3'- caGUa--CUGCG-AGAGGGUgcaUCCGGC- -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 56903 | 0.69 | 0.833681 |
Target: 5'- cGUCAuggaacUGACGUcuaccgaUCUCCuCACGUAcGGCCu -3' miRNA: 3'- -CAGU------ACUGCG-------AGAGG-GUGCAU-CCGGc -5' |
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15850 | 3' | -56.5 | NC_004065.1 | + | 91027 | 0.66 | 0.950352 |
Target: 5'- -cCAUGGCcaccgucccgaGCUCguagCaCCGCGUGGGCuCGg -3' miRNA: 3'- caGUACUG-----------CGAGa---G-GGUGCAUCCG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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