miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 135560 0.66 0.926767
Target:  5'- gGCGGACGacgGGGaGgcGGCCGUCa-- -3'
miRNA:   3'- aCGCCUGCa--CCUgCuaCCGGUAGcgc -5'
15850 5' -58 NC_004065.1 + 107803 0.66 0.926767
Target:  5'- -uUGGcCGUGGGCGAgcgGGCCAccaGCc -3'
miRNA:   3'- acGCCuGCACCUGCUa--CCGGUag-CGc -5'
15850 5' -58 NC_004065.1 + 24372 0.66 0.926767
Target:  5'- gGC-GACGUGGGCaaaGGCC-UCGCu -3'
miRNA:   3'- aCGcCUGCACCUGcuaCCGGuAGCGc -5'
15850 5' -58 NC_004065.1 + 124818 0.66 0.925233
Target:  5'- cGcCGGGCGUccACGAacagcggcuccgccUGGuCCAUCGCGa -3'
miRNA:   3'- aC-GCCUGCAccUGCU--------------ACC-GGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 30377 0.66 0.921577
Target:  5'- -cCGGACaUGGACGugaccUGGCgGaUCGCGg -3'
miRNA:   3'- acGCCUGcACCUGCu----ACCGgU-AGCGC- -5'
15850 5' -58 NC_004065.1 + 192150 0.66 0.921577
Target:  5'- gUGCGGAacauCGUGc-CGAUcaccGCCGUCGCGa -3'
miRNA:   3'- -ACGCCU----GCACcuGCUAc---CGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 33974 0.66 0.921577
Target:  5'- -aCGGGCcccGACGAUGGCUcgCGCu -3'
miRNA:   3'- acGCCUGcacCUGCUACCGGuaGCGc -5'
15850 5' -58 NC_004065.1 + 75205 0.66 0.921577
Target:  5'- cGCGGACGaUGGAcuugaCGAgGGCCga-GCa -3'
miRNA:   3'- aCGCCUGC-ACCU-----GCUaCCGGuagCGc -5'
15850 5' -58 NC_004065.1 + 170981 0.66 0.921577
Target:  5'- cGCGGGaaUGGAgGGUGGUaggaaaguUCGCGa -3'
miRNA:   3'- aCGCCUgcACCUgCUACCGgu------AGCGC- -5'
15850 5' -58 NC_004065.1 + 213269 0.66 0.91617
Target:  5'- gGUGGugGUGGugGuaGUGGUaGUgGUGa -3'
miRNA:   3'- aCGCCugCACCugC--UACCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 133886 0.66 0.91617
Target:  5'- cGcCGGGCG-GaACGAcgGGCCAcccUCGCGg -3'
miRNA:   3'- aC-GCCUGCaCcUGCUa-CCGGU---AGCGC- -5'
15850 5' -58 NC_004065.1 + 96266 0.66 0.91617
Target:  5'- aUGCGGAUGgacGGCGGggcGGCCAgggGCGu -3'
miRNA:   3'- -ACGCCUGCac-CUGCUa--CCGGUag-CGC- -5'
15850 5' -58 NC_004065.1 + 54543 0.66 0.91617
Target:  5'- cUGaCGGucCGUGGACGAUgGGgCGugcUCGCa -3'
miRNA:   3'- -AC-GCCu-GCACCUGCUA-CCgGU---AGCGc -5'
15850 5' -58 NC_004065.1 + 136646 0.66 0.91617
Target:  5'- aGCGG-CGUGGAUccuGGUGGCgAgCGaCGg -3'
miRNA:   3'- aCGCCuGCACCUG---CUACCGgUaGC-GC- -5'
15850 5' -58 NC_004065.1 + 50755 0.66 0.910547
Target:  5'- gUGUGGucGCGUGGAgGAgacacGGCgaAUCGCa -3'
miRNA:   3'- -ACGCC--UGCACCUgCUa----CCGg-UAGCGc -5'
15850 5' -58 NC_004065.1 + 65698 0.66 0.910547
Target:  5'- cGCGGGCGUGcGAgcUGGUGGaCG-CGCa -3'
miRNA:   3'- aCGCCUGCAC-CU--GCUACCgGUaGCGc -5'
15850 5' -58 NC_004065.1 + 18409 0.66 0.910547
Target:  5'- cGUGGugGUGGaaucugaaGCGAUGGUagacgaGCGa -3'
miRNA:   3'- aCGCCugCACC--------UGCUACCGguag--CGC- -5'
15850 5' -58 NC_004065.1 + 17775 0.66 0.910547
Target:  5'- aGCGG-CuuaGACagcgGGUGGCCGUCGCGu -3'
miRNA:   3'- aCGCCuGcacCUG----CUACCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 31580 0.66 0.910546
Target:  5'- cGCGGACGcgGcGACGucggugGGCUAcacUCGCu -3'
miRNA:   3'- aCGCCUGCa-C-CUGCua----CCGGU---AGCGc -5'
15850 5' -58 NC_004065.1 + 43266 0.66 0.910546
Target:  5'- gGCGGACGaaggGGGgGAUGuCCggCGUGg -3'
miRNA:   3'- aCGCCUGCa---CCUgCUACcGGuaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.