miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 213269 0.66 0.91617
Target:  5'- gGUGGugGUGGugGuaGUGGUaGUgGUGa -3'
miRNA:   3'- aCGCCugCACCugC--UACCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 65698 0.66 0.910547
Target:  5'- cGCGGGCGUGcGAgcUGGUGGaCG-CGCa -3'
miRNA:   3'- aCGCCUGCAC-CU--GCUACCgGUaGCGc -5'
15850 5' -58 NC_004065.1 + 107803 0.66 0.926767
Target:  5'- -uUGGcCGUGGGCGAgcgGGCCAccaGCc -3'
miRNA:   3'- acGCCuGCACCUGCUa--CCGGUag-CGc -5'
15850 5' -58 NC_004065.1 + 135560 0.66 0.926767
Target:  5'- gGCGGACGacgGGGaGgcGGCCGUCa-- -3'
miRNA:   3'- aCGCCUGCa--CCUgCuaCCGGUAGcgc -5'
15850 5' -58 NC_004065.1 + 18409 0.66 0.910547
Target:  5'- cGUGGugGUGGaaucugaaGCGAUGGUagacgaGCGa -3'
miRNA:   3'- aCGCCugCACC--------UGCUACCGguag--CGC- -5'
15850 5' -58 NC_004065.1 + 136646 0.66 0.91617
Target:  5'- aGCGG-CGUGGAUccuGGUGGCgAgCGaCGg -3'
miRNA:   3'- aCGCCuGCACCUG---CUACCGgUaGC-GC- -5'
15850 5' -58 NC_004065.1 + 50755 0.66 0.910547
Target:  5'- gUGUGGucGCGUGGAgGAgacacGGCgaAUCGCa -3'
miRNA:   3'- -ACGCC--UGCACCUgCUa----CCGg-UAGCGc -5'
15850 5' -58 NC_004065.1 + 17775 0.66 0.910547
Target:  5'- aGCGG-CuuaGACagcgGGUGGCCGUCGCGu -3'
miRNA:   3'- aCGCCuGcacCUG----CUACCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 99384 0.67 0.858041
Target:  5'- aUGaCGGGCGUGGGCugccuggcgGcgGGCgCGUUGCu -3'
miRNA:   3'- -AC-GCCUGCACCUG---------CuaCCG-GUAGCGc -5'
15850 5' -58 NC_004065.1 + 139704 0.67 0.879248
Target:  5'- cGCGGACGcgcuugccggaugagGGACG-UGGCCGaggaacuUCGUa -3'
miRNA:   3'- aCGCCUGCa--------------CCUGCuACCGGU-------AGCGc -5'
15850 5' -58 NC_004065.1 + 47286 0.67 0.879248
Target:  5'- cGCcGACGUGu-CGGUGGCCccggcGUCGCc -3'
miRNA:   3'- aCGcCUGCACcuGCUACCGG-----UAGCGc -5'
15850 5' -58 NC_004065.1 + 212841 0.67 0.891115
Target:  5'- cUGgGGACGaGGACGAUccuuugggggauGCCGUCGUa -3'
miRNA:   3'- -ACgCCUGCaCCUGCUAc-----------CGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 90665 0.67 0.892393
Target:  5'- cGuCGGugGUGGAgagcgccgaauCGAUGGUCuccCGCa -3'
miRNA:   3'- aC-GCCugCACCU-----------GCUACCGGua-GCGc -5'
15850 5' -58 NC_004065.1 + 193479 0.67 0.865303
Target:  5'- cGCGGGCGccGGACGgAUGcCCGUUaGCGa -3'
miRNA:   3'- aCGCCUGCa-CCUGC-UACcGGUAG-CGC- -5'
15850 5' -58 NC_004065.1 + 77200 0.67 0.856566
Target:  5'- gUGCGcGGCGgcgccccgcacGGCGAUGGCCA-CGCu -3'
miRNA:   3'- -ACGC-CUGCac---------CUGCUACCGGUaGCGc -5'
15850 5' -58 NC_004065.1 + 32951 0.67 0.858041
Target:  5'- cGCGGAUGcGGGCGucga-CGUCGCGg -3'
miRNA:   3'- aCGCCUGCaCCUGCuaccgGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 188257 0.67 0.858041
Target:  5'- gGCGGACagGUcGGCGGucaucuUGGCCAcccUCGCGu -3'
miRNA:   3'- aCGCCUG--CAcCUGCU------ACCGGU---AGCGC- -5'
15850 5' -58 NC_004065.1 + 226125 0.67 0.865303
Target:  5'- gGCGGgggucgccGCGUGGAgGcUGGC-AUCGCa -3'
miRNA:   3'- aCGCC--------UGCACCUgCuACCGgUAGCGc -5'
15850 5' -58 NC_004065.1 + 103082 0.67 0.872374
Target:  5'- gGCGu-CGUGaaGAUGAucuUGGCCAUCGCc -3'
miRNA:   3'- aCGCcuGCAC--CUGCU---ACCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 19468 0.67 0.879248
Target:  5'- gUGgGGACG-GGAguCGGUGGagcgcccaUCGUCGCGa -3'
miRNA:   3'- -ACgCCUGCaCCU--GCUACC--------GGUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.