miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 84885 1.08 0.00381
Target:  5'- cUGCGGACGUGGACGAUGGCCAUCGCGu -3'
miRNA:   3'- -ACGCCUGCACCUGCUACCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 213224 0.8 0.262539
Target:  5'- gGCGGcCGUGGACGAUGGUUcgGUCGuCGg -3'
miRNA:   3'- aCGCCuGCACCUGCUACCGG--UAGC-GC- -5'
15850 5' -58 NC_004065.1 + 33804 0.8 0.262539
Target:  5'- aUGCGGACGUgGGACGAcgcggacaagcUGGCCAUCa-- -3'
miRNA:   3'- -ACGCCUGCA-CCUGCU-----------ACCGGUAGcgc -5'
15850 5' -58 NC_004065.1 + 119531 0.77 0.356989
Target:  5'- cGgGGACGUGGuCGAgGGCCAggGCGa -3'
miRNA:   3'- aCgCCUGCACCuGCUaCCGGUagCGC- -5'
15850 5' -58 NC_004065.1 + 56624 0.77 0.356989
Target:  5'- cGCGGAUGUGGauGCGGUGGCagcggcCGCGg -3'
miRNA:   3'- aCGCCUGCACC--UGCUACCGgua---GCGC- -5'
15850 5' -58 NC_004065.1 + 96745 0.76 0.426672
Target:  5'- cGCGGGCGaGGGCGAgcagGGCgacggcggaggcggCAUCGCGg -3'
miRNA:   3'- aCGCCUGCaCCUGCUa---CCG--------------GUAGCGC- -5'
15850 5' -58 NC_004065.1 + 143900 0.74 0.500123
Target:  5'- cGCGGACG-GGACGGUGGUgcccaGCGa -3'
miRNA:   3'- aCGCCUGCaCCUGCUACCGguag-CGC- -5'
15850 5' -58 NC_004065.1 + 138990 0.74 0.50936
Target:  5'- cGCGGugcuACGagcucgGGACGGUGGCCAUggacCGCGu -3'
miRNA:   3'- aCGCC----UGCa-----CCUGCUACCGGUA----GCGC- -5'
15850 5' -58 NC_004065.1 + 200867 0.73 0.585418
Target:  5'- cGgGGGCGcGGGCGGUGGCgaAUCGuCGg -3'
miRNA:   3'- aCgCCUGCaCCUGCUACCGg-UAGC-GC- -5'
15850 5' -58 NC_004065.1 + 201847 0.73 0.56611
Target:  5'- uUGCGGuACGUGGACaGAUGGCgguucagGUCGUa -3'
miRNA:   3'- -ACGCC-UGCACCUG-CUACCGg------UAGCGc -5'
15850 5' -58 NC_004065.1 + 637 0.73 0.585418
Target:  5'- gGCGGAUGUGGGUGAgugcguccGGCCG-CGCGu -3'
miRNA:   3'- aCGCCUGCACCUGCUa-------CCGGUaGCGC- -5'
15850 5' -58 NC_004065.1 + 169151 0.72 0.634116
Target:  5'- gGCGGgaauACGaGGGCcuGAUGGCCuUCGCGg -3'
miRNA:   3'- aCGCC----UGCaCCUG--CUACCGGuAGCGC- -5'
15850 5' -58 NC_004065.1 + 102098 0.72 0.634116
Target:  5'- cGCGGGCG---GCGAUGGCCGgaccgaggugCGCGg -3'
miRNA:   3'- aCGCCUGCaccUGCUACCGGUa---------GCGC- -5'
15850 5' -58 NC_004065.1 + 19923 0.72 0.634117
Target:  5'- aGCGGugGUGG-CGGUGGUUA-CGaCGg -3'
miRNA:   3'- aCGCCugCACCuGCUACCGGUaGC-GC- -5'
15850 5' -58 NC_004065.1 + 196195 0.72 0.595122
Target:  5'- cGCGcacGGCGUGGuuGAUGGCCAgcuugucCGCGu -3'
miRNA:   3'- aCGC---CUGCACCugCUACCGGUa------GCGC- -5'
15850 5' -58 NC_004065.1 + 105228 0.72 0.643879
Target:  5'- gGCGGACGUcGGACGAggagaUGGUgG-CGCa -3'
miRNA:   3'- aCGCCUGCA-CCUGCU-----ACCGgUaGCGc -5'
15850 5' -58 NC_004065.1 + 197995 0.71 0.70106
Target:  5'- gGCaGGACG-GGacacugcGCGAUGGCCucggaggcgGUCGCGg -3'
miRNA:   3'- aCG-CCUGCaCC-------UGCUACCGG---------UAGCGC- -5'
15850 5' -58 NC_004065.1 + 75472 0.71 0.692417
Target:  5'- aGCaGGACGaGGGCGAUGGCgGcgGCGa -3'
miRNA:   3'- aCG-CCUGCaCCUGCUACCGgUagCGC- -5'
15850 5' -58 NC_004065.1 + 100578 0.71 0.702018
Target:  5'- aGCGcGACGccGGAgaccuuagguaUGAUGGCgGUCGCGg -3'
miRNA:   3'- aCGC-CUGCa-CCU-----------GCUACCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 130143 0.71 0.673086
Target:  5'- gGCGaGAgGaaGGACGA-GGCCGUCGCu -3'
miRNA:   3'- aCGC-CUgCa-CCUGCUaCCGGUAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.