Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15850 | 5' | -58 | NC_004065.1 | + | 130143 | 0.71 | 0.673086 |
Target: 5'- gGCGaGAgGaaGGACGA-GGCCGUCGCu -3' miRNA: 3'- aCGC-CUgCa-CCUGCUaCCGGUAGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 62380 | 0.7 | 0.749061 |
Target: 5'- gGCGGGgGUGGugGcggcggggGUGGCgGcCGCGg -3' miRNA: 3'- aCGCCUgCACCugC--------UACCGgUaGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 192388 | 0.7 | 0.739807 |
Target: 5'- cUGCGGcCGUguccaGGACGGUGGCC--UGUGa -3' miRNA: 3'- -ACGCCuGCA-----CCUGCUACCGGuaGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 166158 | 0.7 | 0.749061 |
Target: 5'- gUGCgGGugGUGGuccuucGCGAacgcGGCCAUgGCGa -3' miRNA: 3'- -ACG-CCugCACC------UGCUa---CCGGUAgCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 141395 | 0.7 | 0.749061 |
Target: 5'- gGCucGACGUGGAuccCGAgcuggcGGCCAUCGCc -3' miRNA: 3'- aCGc-CUGCACCU---GCUa-----CCGGUAGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 48094 | 0.7 | 0.758221 |
Target: 5'- cGCGGACcUGuGGCGgcGGCgGUgGCGg -3' miRNA: 3'- aCGCCUGcAC-CUGCuaCCGgUAgCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 146581 | 0.7 | 0.758221 |
Target: 5'- cGCGGGuaaGgGGAUcggGGUGGCCAUCGgGg -3' miRNA: 3'- aCGCCUg--CaCCUG---CUACCGGUAGCgC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 105170 | 0.69 | 0.802341 |
Target: 5'- -uCGGACGUGGcgcggaugaucGCGAUGGaCCAg-GCGg -3' miRNA: 3'- acGCCUGCACC-----------UGCUACC-GGUagCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 68141 | 0.69 | 0.776229 |
Target: 5'- cUGuCGGACGagcUGGACGc-GGUgAUCGCGg -3' miRNA: 3'- -AC-GCCUGC---ACCUGCuaCCGgUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 33615 | 0.69 | 0.78506 |
Target: 5'- cUGCGGGCc-GGcAUGGccaaGGCCAUCGCGu -3' miRNA: 3'- -ACGCCUGcaCC-UGCUa---CCGGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 171958 | 0.69 | 0.776229 |
Target: 5'- gGCGGGCgGUGGcggcggcggcgGCGGaggGGUCGUCGUGa -3' miRNA: 3'- aCGCCUG-CACC-----------UGCUa--CCGGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 200568 | 0.69 | 0.776229 |
Target: 5'- aGCGGgaacACG-GGugGAgaagGGUgGUCGCGg -3' miRNA: 3'- aCGCC----UGCaCCugCUa---CCGgUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 23616 | 0.69 | 0.7903 |
Target: 5'- gGCGGGCaggcggGUGGACGGgcggcuggccucgGGCCGaCGCa -3' miRNA: 3'- aCGCCUG------CACCUGCUa------------CCGGUaGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 68035 | 0.69 | 0.802341 |
Target: 5'- cGUGGACGUGGGCcGccagcugcUGGCgCA-CGCGa -3' miRNA: 3'- aCGCCUGCACCUGcU--------ACCG-GUaGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 141628 | 0.69 | 0.794631 |
Target: 5'- gGCGGugGcggcucggcgacggaGGGCGGUGGCgGUgcCGCGg -3' miRNA: 3'- aCGCCugCa--------------CCUGCUACCGgUA--GCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 194064 | 0.69 | 0.76728 |
Target: 5'- cGCGGACGUaacGACGAUaGaaGUCGCGg -3' miRNA: 3'- aCGCCUGCAc--CUGCUAcCggUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 132358 | 0.69 | 0.776229 |
Target: 5'- uUGUGGAgGcGGuagcACGGgcaGGCCGUCGCGu -3' miRNA: 3'- -ACGCCUgCaCC----UGCUa--CCGGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 168548 | 0.69 | 0.767279 |
Target: 5'- gGCauGGugGUGGACGccAUGGCgCAgCGCa -3' miRNA: 3'- aCG--CCugCACCUGC--UACCG-GUaGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 179674 | 0.69 | 0.776229 |
Target: 5'- aGCGGGgG-GGcucgggaucgcgGCGGUGGCCA-CGCGu -3' miRNA: 3'- aCGCCUgCaCC------------UGCUACCGGUaGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 165430 | 0.69 | 0.78506 |
Target: 5'- gGCGGGCGUcGcCGcGUGGUUAUCGUGg -3' miRNA: 3'- aCGCCUGCAcCuGC-UACCGGUAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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