Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15850 | 5' | -58 | NC_004065.1 | + | 68035 | 0.69 | 0.802341 |
Target: 5'- cGUGGACGUGGGCcGccagcugcUGGCgCA-CGCGa -3' miRNA: 3'- aCGCCUGCACCUGcU--------ACCG-GUaGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 26949 | 0.68 | 0.827193 |
Target: 5'- -uCGGugGUGGAaagaUGAUGGCgGUgGUGg -3' miRNA: 3'- acGCCugCACCU----GCUACCGgUAgCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 191973 | 0.68 | 0.827193 |
Target: 5'- gGCGGcACGuUGGACGGgucgugGGCCAgcaggauggugUGCGg -3' miRNA: 3'- aCGCC-UGC-ACCUGCUa-----CCGGUa----------GCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 132158 | 0.68 | 0.835163 |
Target: 5'- aGCcuGGACGUGGugGc-GGCgAUgGCGg -3' miRNA: 3'- aCG--CCUGCACCugCuaCCGgUAgCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 207791 | 0.68 | 0.850594 |
Target: 5'- aUGuUGGGCGccGGcACGAUgacGGUCAUCGCGa -3' miRNA: 3'- -AC-GCCUGCa-CC-UGCUA---CCGGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 182506 | 0.68 | 0.842966 |
Target: 5'- gGCGGugGUcccaauagGGGCGGUGGUCccaaucaagAUgGCGg -3' miRNA: 3'- aCGCCugCA--------CCUGCUACCGG---------UAgCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 124313 | 0.68 | 0.827193 |
Target: 5'- cGCGGAUGUcGugGuucGCCGUCGCc -3' miRNA: 3'- aCGCCUGCAcCugCuacCGGUAGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 200790 | 0.68 | 0.819062 |
Target: 5'- gGCGGugGcGGGCGAcGGCgucucggCGCGg -3' miRNA: 3'- aCGCCugCaCCUGCUaCCGgua----GCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 165388 | 0.68 | 0.819061 |
Target: 5'- gGCGGACGcgcGGuCGAUGGCCuUCu-- -3' miRNA: 3'- aCGCCUGCa--CCuGCUACCGGuAGcgc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 111915 | 0.68 | 0.842193 |
Target: 5'- cGCGcGGCGacgagagacgccaUGGGCGcc-GCCGUCGCGg -3' miRNA: 3'- aCGC-CUGC-------------ACCUGCuacCGGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 107092 | 0.68 | 0.835163 |
Target: 5'- cGgGGACGUGGG-GAa-GCUGUCGCGg -3' miRNA: 3'- aCgCCUGCACCUgCUacCGGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 184796 | 0.68 | 0.850594 |
Target: 5'- gGCGGAgGaGGACGGugacgcaacggUGGCgGUgGCGg -3' miRNA: 3'- aCGCCUgCaCCUGCU-----------ACCGgUAgCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 209413 | 0.68 | 0.850594 |
Target: 5'- cGCGGAacuCGUccuggaagaGGAacaGAUGGCCGUCGa- -3' miRNA: 3'- aCGCCU---GCA---------CCUg--CUACCGGUAGCgc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 103082 | 0.67 | 0.872374 |
Target: 5'- gGCGu-CGUGaaGAUGAucuUGGCCAUCGCc -3' miRNA: 3'- aCGCcuGCAC--CUGCU---ACCGGUAGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 139704 | 0.67 | 0.879248 |
Target: 5'- cGCGGACGcgcuugccggaugagGGACG-UGGCCGaggaacuUCGUa -3' miRNA: 3'- aCGCCUGCa--------------CCUGCuACCGGU-------AGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 73965 | 0.67 | 0.885923 |
Target: 5'- gGCGucGGCGaGGuCGA-GGUCGUCGCGg -3' miRNA: 3'- aCGC--CUGCaCCuGCUaCCGGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 47286 | 0.67 | 0.879248 |
Target: 5'- cGCcGACGUGu-CGGUGGCCccggcGUCGCc -3' miRNA: 3'- aCGcCUGCACcuGCUACCGG-----UAGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 19468 | 0.67 | 0.879248 |
Target: 5'- gUGgGGACG-GGAguCGGUGGagcgcccaUCGUCGCGa -3' miRNA: 3'- -ACgCCUGCaCCU--GCUACC--------GGUAGCGC- -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 226125 | 0.67 | 0.865303 |
Target: 5'- gGCGGgggucgccGCGUGGAgGcUGGC-AUCGCa -3' miRNA: 3'- aCGCC--------UGCACCUgCuACCGgUAGCGc -5' |
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15850 | 5' | -58 | NC_004065.1 | + | 32951 | 0.67 | 0.858041 |
Target: 5'- cGCGGAUGcGGGCGucga-CGUCGCGg -3' miRNA: 3'- aCGCCUGCaCCUGCuaccgGUAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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