miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 100578 0.71 0.702018
Target:  5'- aGCGcGACGccGGAgaccuuagguaUGAUGGCgGUCGCGg -3'
miRNA:   3'- aCGC-CUGCa-CCU-----------GCUACCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 192388 0.7 0.739807
Target:  5'- cUGCGGcCGUguccaGGACGGUGGCC--UGUGa -3'
miRNA:   3'- -ACGCCuGCA-----CCUGCUACCGGuaGCGC- -5'
15850 5' -58 NC_004065.1 + 62380 0.7 0.749061
Target:  5'- gGCGGGgGUGGugGcggcggggGUGGCgGcCGCGg -3'
miRNA:   3'- aCGCCUgCACCugC--------UACCGgUaGCGC- -5'
15850 5' -58 NC_004065.1 + 166158 0.7 0.749061
Target:  5'- gUGCgGGugGUGGuccuucGCGAacgcGGCCAUgGCGa -3'
miRNA:   3'- -ACG-CCugCACC------UGCUa---CCGGUAgCGC- -5'
15850 5' -58 NC_004065.1 + 141395 0.7 0.749061
Target:  5'- gGCucGACGUGGAuccCGAgcuggcGGCCAUCGCc -3'
miRNA:   3'- aCGc-CUGCACCU---GCUa-----CCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 146581 0.7 0.758221
Target:  5'- cGCGGGuaaGgGGAUcggGGUGGCCAUCGgGg -3'
miRNA:   3'- aCGCCUg--CaCCUG---CUACCGGUAGCgC- -5'
15850 5' -58 NC_004065.1 + 48094 0.7 0.758221
Target:  5'- cGCGGACcUGuGGCGgcGGCgGUgGCGg -3'
miRNA:   3'- aCGCCUGcAC-CUGCuaCCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 168548 0.69 0.767279
Target:  5'- gGCauGGugGUGGACGccAUGGCgCAgCGCa -3'
miRNA:   3'- aCG--CCugCACCUGC--UACCG-GUaGCGc -5'
15850 5' -58 NC_004065.1 + 194064 0.69 0.76728
Target:  5'- cGCGGACGUaacGACGAUaGaaGUCGCGg -3'
miRNA:   3'- aCGCCUGCAc--CUGCUAcCggUAGCGC- -5'
15850 5' -58 NC_004065.1 + 132358 0.69 0.776229
Target:  5'- uUGUGGAgGcGGuagcACGGgcaGGCCGUCGCGu -3'
miRNA:   3'- -ACGCCUgCaCC----UGCUa--CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 200568 0.69 0.776229
Target:  5'- aGCGGgaacACG-GGugGAgaagGGUgGUCGCGg -3'
miRNA:   3'- aCGCC----UGCaCCugCUa---CCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 179674 0.69 0.776229
Target:  5'- aGCGGGgG-GGcucgggaucgcgGCGGUGGCCA-CGCGu -3'
miRNA:   3'- aCGCCUgCaCC------------UGCUACCGGUaGCGC- -5'
15850 5' -58 NC_004065.1 + 68141 0.69 0.776229
Target:  5'- cUGuCGGACGagcUGGACGc-GGUgAUCGCGg -3'
miRNA:   3'- -AC-GCCUGC---ACCUGCuaCCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 171958 0.69 0.776229
Target:  5'- gGCGGGCgGUGGcggcggcggcgGCGGaggGGUCGUCGUGa -3'
miRNA:   3'- aCGCCUG-CACC-----------UGCUa--CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 165430 0.69 0.78506
Target:  5'- gGCGGGCGUcGcCGcGUGGUUAUCGUGg -3'
miRNA:   3'- aCGCCUGCAcCuGC-UACCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 33615 0.69 0.78506
Target:  5'- cUGCGGGCc-GGcAUGGccaaGGCCAUCGCGu -3'
miRNA:   3'- -ACGCCUGcaCC-UGCUa---CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 23616 0.69 0.7903
Target:  5'- gGCGGGCaggcggGUGGACGGgcggcuggccucgGGCCGaCGCa -3'
miRNA:   3'- aCGCCUG------CACCUGCUa------------CCGGUaGCGc -5'
15850 5' -58 NC_004065.1 + 141628 0.69 0.794631
Target:  5'- gGCGGugGcggcucggcgacggaGGGCGGUGGCgGUgcCGCGg -3'
miRNA:   3'- aCGCCugCa--------------CCUGCUACCGgUA--GCGC- -5'
15850 5' -58 NC_004065.1 + 68035 0.69 0.802341
Target:  5'- cGUGGACGUGGGCcGccagcugcUGGCgCA-CGCGa -3'
miRNA:   3'- aCGCCUGCACCUGcU--------ACCG-GUaGCGC- -5'
15850 5' -58 NC_004065.1 + 105170 0.69 0.802341
Target:  5'- -uCGGACGUGGcgcggaugaucGCGAUGGaCCAg-GCGg -3'
miRNA:   3'- acGCCUGCACC-----------UGCUACC-GGUagCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.