miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 68035 0.69 0.802341
Target:  5'- cGUGGACGUGGGCcGccagcugcUGGCgCA-CGCGa -3'
miRNA:   3'- aCGCCUGCACCUGcU--------ACCG-GUaGCGC- -5'
15850 5' -58 NC_004065.1 + 165388 0.68 0.819061
Target:  5'- gGCGGACGcgcGGuCGAUGGCCuUCu-- -3'
miRNA:   3'- aCGCCUGCa--CCuGCUACCGGuAGcgc -5'
15850 5' -58 NC_004065.1 + 200790 0.68 0.819062
Target:  5'- gGCGGugGcGGGCGAcGGCgucucggCGCGg -3'
miRNA:   3'- aCGCCugCaCCUGCUaCCGgua----GCGC- -5'
15850 5' -58 NC_004065.1 + 26949 0.68 0.827193
Target:  5'- -uCGGugGUGGAaagaUGAUGGCgGUgGUGg -3'
miRNA:   3'- acGCCugCACCU----GCUACCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 191973 0.68 0.827193
Target:  5'- gGCGGcACGuUGGACGGgucgugGGCCAgcaggauggugUGCGg -3'
miRNA:   3'- aCGCC-UGC-ACCUGCUa-----CCGGUa----------GCGC- -5'
15850 5' -58 NC_004065.1 + 124313 0.68 0.827193
Target:  5'- cGCGGAUGUcGugGuucGCCGUCGCc -3'
miRNA:   3'- aCGCCUGCAcCugCuacCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 107092 0.68 0.835163
Target:  5'- cGgGGACGUGGG-GAa-GCUGUCGCGg -3'
miRNA:   3'- aCgCCUGCACCUgCUacCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 132158 0.68 0.835163
Target:  5'- aGCcuGGACGUGGugGc-GGCgAUgGCGg -3'
miRNA:   3'- aCG--CCUGCACCugCuaCCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 111915 0.68 0.842193
Target:  5'- cGCGcGGCGacgagagacgccaUGGGCGcc-GCCGUCGCGg -3'
miRNA:   3'- aCGC-CUGC-------------ACCUGCuacCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 182506 0.68 0.842966
Target:  5'- gGCGGugGUcccaauagGGGCGGUGGUCccaaucaagAUgGCGg -3'
miRNA:   3'- aCGCCugCA--------CCUGCUACCGG---------UAgCGC- -5'
15850 5' -58 NC_004065.1 + 207791 0.68 0.850594
Target:  5'- aUGuUGGGCGccGGcACGAUgacGGUCAUCGCGa -3'
miRNA:   3'- -AC-GCCUGCa-CC-UGCUA---CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 184796 0.68 0.850594
Target:  5'- gGCGGAgGaGGACGGugacgcaacggUGGCgGUgGCGg -3'
miRNA:   3'- aCGCCUgCaCCUGCU-----------ACCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 209413 0.68 0.850594
Target:  5'- cGCGGAacuCGUccuggaagaGGAacaGAUGGCCGUCGa- -3'
miRNA:   3'- aCGCCU---GCA---------CCUg--CUACCGGUAGCgc -5'
15850 5' -58 NC_004065.1 + 77200 0.67 0.856566
Target:  5'- gUGCGcGGCGgcgccccgcacGGCGAUGGCCA-CGCu -3'
miRNA:   3'- -ACGC-CUGCac---------CUGCUACCGGUaGCGc -5'
15850 5' -58 NC_004065.1 + 99384 0.67 0.858041
Target:  5'- aUGaCGGGCGUGGGCugccuggcgGcgGGCgCGUUGCu -3'
miRNA:   3'- -AC-GCCUGCACCUG---------CuaCCG-GUAGCGc -5'
15850 5' -58 NC_004065.1 + 188257 0.67 0.858041
Target:  5'- gGCGGACagGUcGGCGGucaucuUGGCCAcccUCGCGu -3'
miRNA:   3'- aCGCCUG--CAcCUGCU------ACCGGU---AGCGC- -5'
15850 5' -58 NC_004065.1 + 32951 0.67 0.858041
Target:  5'- cGCGGAUGcGGGCGucga-CGUCGCGg -3'
miRNA:   3'- aCGCCUGCaCCUGCuaccgGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 226125 0.67 0.865303
Target:  5'- gGCGGgggucgccGCGUGGAgGcUGGC-AUCGCa -3'
miRNA:   3'- aCGCC--------UGCACCUgCuACCGgUAGCGc -5'
15850 5' -58 NC_004065.1 + 193479 0.67 0.865303
Target:  5'- cGCGGGCGccGGACGgAUGcCCGUUaGCGa -3'
miRNA:   3'- aCGCCUGCa-CCUGC-UACcGGUAG-CGC- -5'
15850 5' -58 NC_004065.1 + 103082 0.67 0.872374
Target:  5'- gGCGu-CGUGaaGAUGAucuUGGCCAUCGCc -3'
miRNA:   3'- aCGCcuGCAC--CUGCU---ACCGGUAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.