miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 103082 0.67 0.872374
Target:  5'- gGCGu-CGUGaaGAUGAucuUGGCCAUCGCc -3'
miRNA:   3'- aCGCcuGCAC--CUGCU---ACCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 19468 0.67 0.879248
Target:  5'- gUGgGGACG-GGAguCGGUGGagcgcccaUCGUCGCGa -3'
miRNA:   3'- -ACgCCUGCaCCU--GCUACC--------GGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 47286 0.67 0.879248
Target:  5'- cGCcGACGUGu-CGGUGGCCccggcGUCGCc -3'
miRNA:   3'- aCGcCUGCACcuGCUACCGG-----UAGCGc -5'
15850 5' -58 NC_004065.1 + 139704 0.67 0.879248
Target:  5'- cGCGGACGcgcuugccggaugagGGACG-UGGCCGaggaacuUCGUa -3'
miRNA:   3'- aCGCCUGCa--------------CCUGCuACCGGU-------AGCGc -5'
15850 5' -58 NC_004065.1 + 73965 0.67 0.885923
Target:  5'- gGCGucGGCGaGGuCGA-GGUCGUCGCGg -3'
miRNA:   3'- aCGC--CUGCaCCuGCUaCCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 44524 0.67 0.885923
Target:  5'- gGCGcGAUGUuaccggGGACGGUGGCgG-CGCu -3'
miRNA:   3'- aCGC-CUGCA------CCUGCUACCGgUaGCGc -5'
15850 5' -58 NC_004065.1 + 173252 0.67 0.885923
Target:  5'- aGCuaGGACG---GCGAUGGCCGUCGa- -3'
miRNA:   3'- aCG--CCUGCaccUGCUACCGGUAGCgc -5'
15850 5' -58 NC_004065.1 + 74905 0.67 0.885923
Target:  5'- cGCGGGCGcGGAgGAaGGCgA-CGCa -3'
miRNA:   3'- aCGCCUGCaCCUgCUaCCGgUaGCGc -5'
15850 5' -58 NC_004065.1 + 212841 0.67 0.891115
Target:  5'- cUGgGGACGaGGACGAUccuuugggggauGCCGUCGUa -3'
miRNA:   3'- -ACgCCUGCaCCUGCUAc-----------CGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 90665 0.67 0.892393
Target:  5'- cGuCGGugGUGGAgagcgccgaauCGAUGGUCuccCGCa -3'
miRNA:   3'- aC-GCCugCACCU-----------GCUACCGGua-GCGc -5'
15850 5' -58 NC_004065.1 + 96694 0.67 0.892393
Target:  5'- gUGCGGGCGaggGGACGAagacGGCgAuuUCGaCGg -3'
miRNA:   3'- -ACGCCUGCa--CCUGCUa---CCGgU--AGC-GC- -5'
15850 5' -58 NC_004065.1 + 22304 0.66 0.89742
Target:  5'- gGUGGG-GUGGACGGUGacguugacgaccCCGUCGCa -3'
miRNA:   3'- aCGCCUgCACCUGCUACc-----------GGUAGCGc -5'
15850 5' -58 NC_004065.1 + 138301 0.66 0.898656
Target:  5'- --aGGcCGUGGACGc-GGCCcugAUCGCGu -3'
miRNA:   3'- acgCCuGCACCUGCuaCCGG---UAGCGC- -5'
15850 5' -58 NC_004065.1 + 168549 0.66 0.898656
Target:  5'- gGCGGugGUGGcaGCGgcGGCgGcgGCGa -3'
miRNA:   3'- aCGCCugCACC--UGCuaCCGgUagCGC- -5'
15850 5' -58 NC_004065.1 + 127204 0.66 0.904112
Target:  5'- cGgGGACGUGGuucgggaGCGgcGGCCGcgaggaucgggCGCGg -3'
miRNA:   3'- aCgCCUGCACC-------UGCuaCCGGUa----------GCGC- -5'
15850 5' -58 NC_004065.1 + 115608 0.66 0.904708
Target:  5'- aUGUGGGg--GGAUGAUGGCUGUCuucagGCGg -3'
miRNA:   3'- -ACGCCUgcaCCUGCUACCGGUAG-----CGC- -5'
15850 5' -58 NC_004065.1 + 24861 0.66 0.904708
Target:  5'- gGCGGcgacgGCGgccucGACGGUGGCaaaGUCGCu -3'
miRNA:   3'- aCGCC-----UGCac---CUGCUACCGg--UAGCGc -5'
15850 5' -58 NC_004065.1 + 63461 0.66 0.904708
Target:  5'- aGCGG--GUGGACGAcccggUGcagccgccaggcGCCGUCGCGc -3'
miRNA:   3'- aCGCCugCACCUGCU-----AC------------CGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 7369 0.66 0.909972
Target:  5'- cUGuCGGACGUGGggcgcugACGcgGGCCcuccucgguacUCGCGc -3'
miRNA:   3'- -AC-GCCUGCACC-------UGCuaCCGGu----------AGCGC- -5'
15850 5' -58 NC_004065.1 + 43266 0.66 0.910546
Target:  5'- gGCGGACGaaggGGGgGAUGuCCggCGUGg -3'
miRNA:   3'- aCGCCUGCa---CCUgCUACcGGuaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.