miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 637 0.73 0.585418
Target:  5'- gGCGGAUGUGGGUGAgugcguccGGCCG-CGCGu -3'
miRNA:   3'- aCGCCUGCACCUGCUa-------CCGGUaGCGC- -5'
15850 5' -58 NC_004065.1 + 7369 0.66 0.909972
Target:  5'- cUGuCGGACGUGGggcgcugACGcgGGCCcuccucgguacUCGCGc -3'
miRNA:   3'- -AC-GCCUGCACC-------UGCuaCCGGu----------AGCGC- -5'
15850 5' -58 NC_004065.1 + 17775 0.66 0.910547
Target:  5'- aGCGG-CuuaGACagcgGGUGGCCGUCGCGu -3'
miRNA:   3'- aCGCCuGcacCUG----CUACCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 18409 0.66 0.910547
Target:  5'- cGUGGugGUGGaaucugaaGCGAUGGUagacgaGCGa -3'
miRNA:   3'- aCGCCugCACC--------UGCUACCGguag--CGC- -5'
15850 5' -58 NC_004065.1 + 19468 0.67 0.879248
Target:  5'- gUGgGGACG-GGAguCGGUGGagcgcccaUCGUCGCGa -3'
miRNA:   3'- -ACgCCUGCaCCU--GCUACC--------GGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 19923 0.72 0.634117
Target:  5'- aGCGGugGUGG-CGGUGGUUA-CGaCGg -3'
miRNA:   3'- aCGCCugCACCuGCUACCGGUaGC-GC- -5'
15850 5' -58 NC_004065.1 + 22304 0.66 0.89742
Target:  5'- gGUGGG-GUGGACGGUGacguugacgaccCCGUCGCa -3'
miRNA:   3'- aCGCCUgCACCUGCUACc-----------GGUAGCGc -5'
15850 5' -58 NC_004065.1 + 23616 0.69 0.7903
Target:  5'- gGCGGGCaggcggGUGGACGGgcggcuggccucgGGCCGaCGCa -3'
miRNA:   3'- aCGCCUG------CACCUGCUa------------CCGGUaGCGc -5'
15850 5' -58 NC_004065.1 + 24372 0.66 0.926767
Target:  5'- gGC-GACGUGGGCaaaGGCC-UCGCu -3'
miRNA:   3'- aCGcCUGCACCUGcuaCCGGuAGCGc -5'
15850 5' -58 NC_004065.1 + 24861 0.66 0.904708
Target:  5'- gGCGGcgacgGCGgccucGACGGUGGCaaaGUCGCu -3'
miRNA:   3'- aCGCC-----UGCac---CUGCUACCGg--UAGCGc -5'
15850 5' -58 NC_004065.1 + 26949 0.68 0.827193
Target:  5'- -uCGGugGUGGAaagaUGAUGGCgGUgGUGg -3'
miRNA:   3'- acGCCugCACCU----GCUACCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 30377 0.66 0.921577
Target:  5'- -cCGGACaUGGACGugaccUGGCgGaUCGCGg -3'
miRNA:   3'- acGCCUGcACCUGCu----ACCGgU-AGCGC- -5'
15850 5' -58 NC_004065.1 + 31580 0.66 0.910546
Target:  5'- cGCGGACGcgGcGACGucggugGGCUAcacUCGCu -3'
miRNA:   3'- aCGCCUGCa-C-CUGCua----CCGGU---AGCGc -5'
15850 5' -58 NC_004065.1 + 32951 0.67 0.858041
Target:  5'- cGCGGAUGcGGGCGucga-CGUCGCGg -3'
miRNA:   3'- aCGCCUGCaCCUGCuaccgGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 33615 0.69 0.78506
Target:  5'- cUGCGGGCc-GGcAUGGccaaGGCCAUCGCGu -3'
miRNA:   3'- -ACGCCUGcaCC-UGCUa---CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 33804 0.8 0.262539
Target:  5'- aUGCGGACGUgGGACGAcgcggacaagcUGGCCAUCa-- -3'
miRNA:   3'- -ACGCCUGCA-CCUGCU-----------ACCGGUAGcgc -5'
15850 5' -58 NC_004065.1 + 33974 0.66 0.921577
Target:  5'- -aCGGGCcccGACGAUGGCUcgCGCu -3'
miRNA:   3'- acGCCUGcacCUGCUACCGGuaGCGc -5'
15850 5' -58 NC_004065.1 + 43266 0.66 0.910546
Target:  5'- gGCGGACGaaggGGGgGAUGuCCggCGUGg -3'
miRNA:   3'- aCGCCUGCa---CCUgCUACcGGuaGCGC- -5'
15850 5' -58 NC_004065.1 + 44524 0.67 0.885923
Target:  5'- gGCGcGAUGUuaccggGGACGGUGGCgG-CGCu -3'
miRNA:   3'- aCGC-CUGCA------CCUGCUACCGgUaGCGc -5'
15850 5' -58 NC_004065.1 + 47286 0.67 0.879248
Target:  5'- cGCcGACGUGu-CGGUGGCCccggcGUCGCc -3'
miRNA:   3'- aCGcCUGCACcuGCUACCGG-----UAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.