miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 48094 0.7 0.758221
Target:  5'- cGCGGACcUGuGGCGgcGGCgGUgGCGg -3'
miRNA:   3'- aCGCCUGcAC-CUGCuaCCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 50755 0.66 0.910547
Target:  5'- gUGUGGucGCGUGGAgGAgacacGGCgaAUCGCa -3'
miRNA:   3'- -ACGCC--UGCACCUgCUa----CCGg-UAGCGc -5'
15850 5' -58 NC_004065.1 + 54543 0.66 0.91617
Target:  5'- cUGaCGGucCGUGGACGAUgGGgCGugcUCGCa -3'
miRNA:   3'- -AC-GCCu-GCACCUGCUA-CCgGU---AGCGc -5'
15850 5' -58 NC_004065.1 + 56624 0.77 0.356989
Target:  5'- cGCGGAUGUGGauGCGGUGGCagcggcCGCGg -3'
miRNA:   3'- aCGCCUGCACC--UGCUACCGgua---GCGC- -5'
15850 5' -58 NC_004065.1 + 62380 0.7 0.749061
Target:  5'- gGCGGGgGUGGugGcggcggggGUGGCgGcCGCGg -3'
miRNA:   3'- aCGCCUgCACCugC--------UACCGgUaGCGC- -5'
15850 5' -58 NC_004065.1 + 63461 0.66 0.904708
Target:  5'- aGCGG--GUGGACGAcccggUGcagccgccaggcGCCGUCGCGc -3'
miRNA:   3'- aCGCCugCACCUGCU-----AC------------CGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 65698 0.66 0.910547
Target:  5'- cGCGGGCGUGcGAgcUGGUGGaCG-CGCa -3'
miRNA:   3'- aCGCCUGCAC-CU--GCUACCgGUaGCGc -5'
15850 5' -58 NC_004065.1 + 67935 0.71 0.702018
Target:  5'- cGCGGACGUGGuACGAgcacCCGuUCGCu -3'
miRNA:   3'- aCGCCUGCACC-UGCUacc-GGU-AGCGc -5'
15850 5' -58 NC_004065.1 + 68035 0.69 0.802341
Target:  5'- cGUGGACGUGGGCcGccagcugcUGGCgCA-CGCGa -3'
miRNA:   3'- aCGCCUGCACCUGcU--------ACCG-GUaGCGC- -5'
15850 5' -58 NC_004065.1 + 68141 0.69 0.776229
Target:  5'- cUGuCGGACGagcUGGACGc-GGUgAUCGCGg -3'
miRNA:   3'- -AC-GCCUGC---ACCUGCuaCCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 73965 0.67 0.885923
Target:  5'- gGCGucGGCGaGGuCGA-GGUCGUCGCGg -3'
miRNA:   3'- aCGC--CUGCaCCuGCUaCCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 74905 0.67 0.885923
Target:  5'- cGCGGGCGcGGAgGAaGGCgA-CGCa -3'
miRNA:   3'- aCGCCUGCaCCUgCUaCCGgUaGCGc -5'
15850 5' -58 NC_004065.1 + 75205 0.66 0.921577
Target:  5'- cGCGGACGaUGGAcuugaCGAgGGCCga-GCa -3'
miRNA:   3'- aCGCCUGC-ACCU-----GCUaCCGGuagCGc -5'
15850 5' -58 NC_004065.1 + 75472 0.71 0.692417
Target:  5'- aGCaGGACGaGGGCGAUGGCgGcgGCGa -3'
miRNA:   3'- aCG-CCUGCaCCUGCUACCGgUagCGC- -5'
15850 5' -58 NC_004065.1 + 77200 0.67 0.856566
Target:  5'- gUGCGcGGCGgcgccccgcacGGCGAUGGCCA-CGCu -3'
miRNA:   3'- -ACGC-CUGCac---------CUGCUACCGGUaGCGc -5'
15850 5' -58 NC_004065.1 + 84885 1.08 0.00381
Target:  5'- cUGCGGACGUGGACGAUGGCCAUCGCGu -3'
miRNA:   3'- -ACGCCUGCACCUGCUACCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 90665 0.67 0.892393
Target:  5'- cGuCGGugGUGGAgagcgccgaauCGAUGGUCuccCGCa -3'
miRNA:   3'- aC-GCCugCACCU-----------GCUACCGGua-GCGc -5'
15850 5' -58 NC_004065.1 + 96266 0.66 0.91617
Target:  5'- aUGCGGAUGgacGGCGGggcGGCCAgggGCGu -3'
miRNA:   3'- -ACGCCUGCac-CUGCUa--CCGGUag-CGC- -5'
15850 5' -58 NC_004065.1 + 96694 0.67 0.892393
Target:  5'- gUGCGGGCGaggGGACGAagacGGCgAuuUCGaCGg -3'
miRNA:   3'- -ACGCCUGCa--CCUGCUa---CCGgU--AGC-GC- -5'
15850 5' -58 NC_004065.1 + 96745 0.76 0.426672
Target:  5'- cGCGGGCGaGGGCGAgcagGGCgacggcggaggcggCAUCGCGg -3'
miRNA:   3'- aCGCCUGCaCCUGCUa---CCG--------------GUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.