miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 99384 0.67 0.858041
Target:  5'- aUGaCGGGCGUGGGCugccuggcgGcgGGCgCGUUGCu -3'
miRNA:   3'- -AC-GCCUGCACCUG---------CuaCCG-GUAGCGc -5'
15850 5' -58 NC_004065.1 + 100578 0.71 0.702018
Target:  5'- aGCGcGACGccGGAgaccuuagguaUGAUGGCgGUCGCGg -3'
miRNA:   3'- aCGC-CUGCa-CCU-----------GCUACCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 102098 0.72 0.634116
Target:  5'- cGCGGGCG---GCGAUGGCCGgaccgaggugCGCGg -3'
miRNA:   3'- aCGCCUGCaccUGCUACCGGUa---------GCGC- -5'
15850 5' -58 NC_004065.1 + 103082 0.67 0.872374
Target:  5'- gGCGu-CGUGaaGAUGAucuUGGCCAUCGCc -3'
miRNA:   3'- aCGCcuGCAC--CUGCU---ACCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 105170 0.69 0.802341
Target:  5'- -uCGGACGUGGcgcggaugaucGCGAUGGaCCAg-GCGg -3'
miRNA:   3'- acGCCUGCACC-----------UGCUACC-GGUagCGC- -5'
15850 5' -58 NC_004065.1 + 105228 0.72 0.643879
Target:  5'- gGCGGACGUcGGACGAggagaUGGUgG-CGCa -3'
miRNA:   3'- aCGCCUGCA-CCUGCU-----ACCGgUaGCGc -5'
15850 5' -58 NC_004065.1 + 107092 0.68 0.835163
Target:  5'- cGgGGACGUGGG-GAa-GCUGUCGCGg -3'
miRNA:   3'- aCgCCUGCACCUgCUacCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 107803 0.66 0.926767
Target:  5'- -uUGGcCGUGGGCGAgcgGGCCAccaGCc -3'
miRNA:   3'- acGCCuGCACCUGCUa--CCGGUag-CGc -5'
15850 5' -58 NC_004065.1 + 111915 0.68 0.842193
Target:  5'- cGCGcGGCGacgagagacgccaUGGGCGcc-GCCGUCGCGg -3'
miRNA:   3'- aCGC-CUGC-------------ACCUGCuacCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 115608 0.66 0.904708
Target:  5'- aUGUGGGg--GGAUGAUGGCUGUCuucagGCGg -3'
miRNA:   3'- -ACGCCUgcaCCUGCUACCGGUAG-----CGC- -5'
15850 5' -58 NC_004065.1 + 119531 0.77 0.356989
Target:  5'- cGgGGACGUGGuCGAgGGCCAggGCGa -3'
miRNA:   3'- aCgCCUGCACCuGCUaCCGGUagCGC- -5'
15850 5' -58 NC_004065.1 + 124313 0.68 0.827193
Target:  5'- cGCGGAUGUcGugGuucGCCGUCGCc -3'
miRNA:   3'- aCGCCUGCAcCugCuacCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 124818 0.66 0.925233
Target:  5'- cGcCGGGCGUccACGAacagcggcuccgccUGGuCCAUCGCGa -3'
miRNA:   3'- aC-GCCUGCAccUGCU--------------ACC-GGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 127204 0.66 0.904112
Target:  5'- cGgGGACGUGGuucgggaGCGgcGGCCGcgaggaucgggCGCGg -3'
miRNA:   3'- aCgCCUGCACC-------UGCuaCCGGUa----------GCGC- -5'
15850 5' -58 NC_004065.1 + 130143 0.71 0.673086
Target:  5'- gGCGaGAgGaaGGACGA-GGCCGUCGCu -3'
miRNA:   3'- aCGC-CUgCa-CCUGCUaCCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 132158 0.68 0.835163
Target:  5'- aGCcuGGACGUGGugGc-GGCgAUgGCGg -3'
miRNA:   3'- aCG--CCUGCACCugCuaCCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 132358 0.69 0.776229
Target:  5'- uUGUGGAgGcGGuagcACGGgcaGGCCGUCGCGu -3'
miRNA:   3'- -ACGCCUgCaCC----UGCUa--CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 133886 0.66 0.91617
Target:  5'- cGcCGGGCG-GaACGAcgGGCCAcccUCGCGg -3'
miRNA:   3'- aC-GCCUGCaCcUGCUa-CCGGU---AGCGC- -5'
15850 5' -58 NC_004065.1 + 135560 0.66 0.926767
Target:  5'- gGCGGACGacgGGGaGgcGGCCGUCa-- -3'
miRNA:   3'- aCGCCUGCa--CCUgCuaCCGGUAGcgc -5'
15850 5' -58 NC_004065.1 + 136646 0.66 0.91617
Target:  5'- aGCGG-CGUGGAUccuGGUGGCgAgCGaCGg -3'
miRNA:   3'- aCGCCuGCACCUG---CUACCGgUaGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.