miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 226125 0.67 0.865303
Target:  5'- gGCGGgggucgccGCGUGGAgGcUGGC-AUCGCa -3'
miRNA:   3'- aCGCC--------UGCACCUgCuACCGgUAGCGc -5'
15850 5' -58 NC_004065.1 + 213269 0.66 0.91617
Target:  5'- gGUGGugGUGGugGuaGUGGUaGUgGUGa -3'
miRNA:   3'- aCGCCugCACCugC--UACCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 213224 0.8 0.262539
Target:  5'- gGCGGcCGUGGACGAUGGUUcgGUCGuCGg -3'
miRNA:   3'- aCGCCuGCACCUGCUACCGG--UAGC-GC- -5'
15850 5' -58 NC_004065.1 + 212841 0.67 0.891115
Target:  5'- cUGgGGACGaGGACGAUccuuugggggauGCCGUCGUa -3'
miRNA:   3'- -ACgCCUGCaCCUGCUAc-----------CGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 209413 0.68 0.850594
Target:  5'- cGCGGAacuCGUccuggaagaGGAacaGAUGGCCGUCGa- -3'
miRNA:   3'- aCGCCU---GCA---------CCUg--CUACCGGUAGCgc -5'
15850 5' -58 NC_004065.1 + 207791 0.68 0.850594
Target:  5'- aUGuUGGGCGccGGcACGAUgacGGUCAUCGCGa -3'
miRNA:   3'- -AC-GCCUGCa-CC-UGCUA---CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 201847 0.73 0.56611
Target:  5'- uUGCGGuACGUGGACaGAUGGCgguucagGUCGUa -3'
miRNA:   3'- -ACGCC-UGCACCUG-CUACCGg------UAGCGc -5'
15850 5' -58 NC_004065.1 + 200867 0.73 0.585418
Target:  5'- cGgGGGCGcGGGCGGUGGCgaAUCGuCGg -3'
miRNA:   3'- aCgCCUGCaCCUGCUACCGg-UAGC-GC- -5'
15850 5' -58 NC_004065.1 + 200790 0.68 0.819062
Target:  5'- gGCGGugGcGGGCGAcGGCgucucggCGCGg -3'
miRNA:   3'- aCGCCugCaCCUGCUaCCGgua----GCGC- -5'
15850 5' -58 NC_004065.1 + 200568 0.69 0.776229
Target:  5'- aGCGGgaacACG-GGugGAgaagGGUgGUCGCGg -3'
miRNA:   3'- aCGCC----UGCaCCugCUa---CCGgUAGCGC- -5'
15850 5' -58 NC_004065.1 + 197995 0.71 0.70106
Target:  5'- gGCaGGACG-GGacacugcGCGAUGGCCucggaggcgGUCGCGg -3'
miRNA:   3'- aCG-CCUGCaCC-------UGCUACCGG---------UAGCGC- -5'
15850 5' -58 NC_004065.1 + 196195 0.72 0.595122
Target:  5'- cGCGcacGGCGUGGuuGAUGGCCAgcuugucCGCGu -3'
miRNA:   3'- aCGC---CUGCACCugCUACCGGUa------GCGC- -5'
15850 5' -58 NC_004065.1 + 194064 0.69 0.76728
Target:  5'- cGCGGACGUaacGACGAUaGaaGUCGCGg -3'
miRNA:   3'- aCGCCUGCAc--CUGCUAcCggUAGCGC- -5'
15850 5' -58 NC_004065.1 + 193479 0.67 0.865303
Target:  5'- cGCGGGCGccGGACGgAUGcCCGUUaGCGa -3'
miRNA:   3'- aCGCCUGCa-CCUGC-UACcGGUAG-CGC- -5'
15850 5' -58 NC_004065.1 + 192388 0.7 0.739807
Target:  5'- cUGCGGcCGUguccaGGACGGUGGCC--UGUGa -3'
miRNA:   3'- -ACGCCuGCA-----CCUGCUACCGGuaGCGC- -5'
15850 5' -58 NC_004065.1 + 192150 0.66 0.921577
Target:  5'- gUGCGGAacauCGUGc-CGAUcaccGCCGUCGCGa -3'
miRNA:   3'- -ACGCCU----GCACcuGCUAc---CGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 191973 0.68 0.827193
Target:  5'- gGCGGcACGuUGGACGGgucgugGGCCAgcaggauggugUGCGg -3'
miRNA:   3'- aCGCC-UGC-ACCUGCUa-----CCGGUa----------GCGC- -5'
15850 5' -58 NC_004065.1 + 188257 0.67 0.858041
Target:  5'- gGCGGACagGUcGGCGGucaucuUGGCCAcccUCGCGu -3'
miRNA:   3'- aCGCCUG--CAcCUGCU------ACCGGU---AGCGC- -5'
15850 5' -58 NC_004065.1 + 184796 0.68 0.850594
Target:  5'- gGCGGAgGaGGACGGugacgcaacggUGGCgGUgGCGg -3'
miRNA:   3'- aCGCCUgCaCCUGCU-----------ACCGgUAgCGC- -5'
15850 5' -58 NC_004065.1 + 182506 0.68 0.842966
Target:  5'- gGCGGugGUcccaauagGGGCGGUGGUCccaaucaagAUgGCGg -3'
miRNA:   3'- aCGCCugCA--------CCUGCUACCGG---------UAgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.