miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15850 5' -58 NC_004065.1 + 179674 0.69 0.776229
Target:  5'- aGCGGGgG-GGcucgggaucgcgGCGGUGGCCA-CGCGu -3'
miRNA:   3'- aCGCCUgCaCC------------UGCUACCGGUaGCGC- -5'
15850 5' -58 NC_004065.1 + 173252 0.67 0.885923
Target:  5'- aGCuaGGACG---GCGAUGGCCGUCGa- -3'
miRNA:   3'- aCG--CCUGCaccUGCUACCGGUAGCgc -5'
15850 5' -58 NC_004065.1 + 171958 0.69 0.776229
Target:  5'- gGCGGGCgGUGGcggcggcggcgGCGGaggGGUCGUCGUGa -3'
miRNA:   3'- aCGCCUG-CACC-----------UGCUa--CCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 170981 0.66 0.921577
Target:  5'- cGCGGGaaUGGAgGGUGGUaggaaaguUCGCGa -3'
miRNA:   3'- aCGCCUgcACCUgCUACCGgu------AGCGC- -5'
15850 5' -58 NC_004065.1 + 169151 0.72 0.634116
Target:  5'- gGCGGgaauACGaGGGCcuGAUGGCCuUCGCGg -3'
miRNA:   3'- aCGCC----UGCaCCUG--CUACCGGuAGCGC- -5'
15850 5' -58 NC_004065.1 + 168549 0.66 0.898656
Target:  5'- gGCGGugGUGGcaGCGgcGGCgGcgGCGa -3'
miRNA:   3'- aCGCCugCACC--UGCuaCCGgUagCGC- -5'
15850 5' -58 NC_004065.1 + 168548 0.69 0.767279
Target:  5'- gGCauGGugGUGGACGccAUGGCgCAgCGCa -3'
miRNA:   3'- aCG--CCugCACCUGC--UACCG-GUaGCGc -5'
15850 5' -58 NC_004065.1 + 166503 0.69 0.802341
Target:  5'- cGCGGcgaucuacggccGCGaGGGCGA-GGCCAUcCGCa -3'
miRNA:   3'- aCGCC------------UGCaCCUGCUaCCGGUA-GCGc -5'
15850 5' -58 NC_004065.1 + 166158 0.7 0.749061
Target:  5'- gUGCgGGugGUGGuccuucGCGAacgcGGCCAUgGCGa -3'
miRNA:   3'- -ACG-CCugCACC------UGCUa---CCGGUAgCGC- -5'
15850 5' -58 NC_004065.1 + 165430 0.69 0.78506
Target:  5'- gGCGGGCGUcGcCGcGUGGUUAUCGUGg -3'
miRNA:   3'- aCGCCUGCAcCuGC-UACCGGUAGCGC- -5'
15850 5' -58 NC_004065.1 + 165388 0.68 0.819061
Target:  5'- gGCGGACGcgcGGuCGAUGGCCuUCu-- -3'
miRNA:   3'- aCGCCUGCa--CCuGCUACCGGuAGcgc -5'
15850 5' -58 NC_004065.1 + 152789 0.67 0.872374
Target:  5'- gUGCaGGAacucgGUGGccACGAucagcgUGGCCAUCGCc -3'
miRNA:   3'- -ACG-CCUg----CACC--UGCU------ACCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 146581 0.7 0.758221
Target:  5'- cGCGGGuaaGgGGAUcggGGUGGCCAUCGgGg -3'
miRNA:   3'- aCGCCUg--CaCCUG---CUACCGGUAGCgC- -5'
15850 5' -58 NC_004065.1 + 143900 0.74 0.500123
Target:  5'- cGCGGACG-GGACGGUGGUgcccaGCGa -3'
miRNA:   3'- aCGCCUGCaCCUGCUACCGguag-CGC- -5'
15850 5' -58 NC_004065.1 + 141628 0.69 0.794631
Target:  5'- gGCGGugGcggcucggcgacggaGGGCGGUGGCgGUgcCGCGg -3'
miRNA:   3'- aCGCCugCa--------------CCUGCUACCGgUA--GCGC- -5'
15850 5' -58 NC_004065.1 + 141395 0.7 0.749061
Target:  5'- gGCucGACGUGGAuccCGAgcuggcGGCCAUCGCc -3'
miRNA:   3'- aCGc-CUGCACCU---GCUa-----CCGGUAGCGc -5'
15850 5' -58 NC_004065.1 + 139704 0.67 0.879248
Target:  5'- cGCGGACGcgcuugccggaugagGGACG-UGGCCGaggaacuUCGUa -3'
miRNA:   3'- aCGCCUGCa--------------CCUGCuACCGGU-------AGCGc -5'
15850 5' -58 NC_004065.1 + 138990 0.74 0.50936
Target:  5'- cGCGGugcuACGagcucgGGACGGUGGCCAUggacCGCGu -3'
miRNA:   3'- aCGCC----UGCa-----CCUGCUACCGGUA----GCGC- -5'
15850 5' -58 NC_004065.1 + 138301 0.66 0.898656
Target:  5'- --aGGcCGUGGACGc-GGCCcugAUCGCGu -3'
miRNA:   3'- acgCCuGCACCUGCuaCCGG---UAGCGC- -5'
15850 5' -58 NC_004065.1 + 136646 0.66 0.91617
Target:  5'- aGCGG-CGUGGAUccuGGUGGCgAgCGaCGg -3'
miRNA:   3'- aCGCCuGCACCUG---CUACCGgUaGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.